Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15e20f
(609 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0731 - 5471795-5471811,5471953-5472035,5472235-5472331,547... 45 5e-05
08_01_0344 + 3043824-3044123,3044260-3044314,3044810-3044985,304... 29 3.8
01_01_0788 + 6111890-6112002,6112121-6112265,6113012-6113086,611... 29 3.8
10_02_0086 - 5112095-5112185,5112487-5112599,5113325-5113431,511... 27 8.8
07_03_1614 + 28152812-28153204,28153301-28153585,28153676-281539... 27 8.8
04_03_0218 + 12780061-12780150,12780864-12781394 27 8.8
03_02_0996 - 13082540-13082818,13083107-13083221,13084135-130842... 27 8.8
>02_01_0731 -
5471795-5471811,5471953-5472035,5472235-5472331,
5472460-5472652,5472782-5472849,5473345-5473639
Length = 250
Score = 44.8 bits (101), Expect = 5e-05
Identities = 39/170 (22%), Positives = 71/170 (41%), Gaps = 2/170 (1%)
Frame = +3
Query: 3 WSLVAGIPFLSFYDVSGQLSYQEEKLFNAVEKNKKGVP-GCIKWSKKPDLNGYTNGIPAH 179
W GI +L YD+ G L +E + +E + G P + + Y +G
Sbjct: 83 WFSTIGINYLILYDIEGVL---KELIQPGIETSTDGNPINSLDVVADTKASCYRHG---- 135
Query: 180 KIVVNIFSCQNGRSTITQCIKEMCEEKIPYNRKSD-QITAQEFDDVISAVYPSIPDPDLA 356
+ + S +G+ I + + + KS+ T + + AV P+PDL
Sbjct: 136 GMFMECLSSSDGKEAIAKVANLLYSTCCNSDNKSEIAFTEADMTHALKAVGTGGPEPDLL 195
Query: 357 LFSGPVCCTHGLLPWQIRLTEFISLSVDYNLSVESFVGAMYKYSKCDQRF 506
L GP G W++R TE + + ++ + V A+Y++S+ Q +
Sbjct: 196 LVYGPGRFHLGFPAWRLRYTEIMYVGPLESMKYGTIVKALYRFSRKYQNY 245
>08_01_0344 +
3043824-3044123,3044260-3044314,3044810-3044985,
3045083-3045283,3045383-3045642,3045909-3046222,
3046399-3046622,3047046-3047398,3047709-3047826,
3047875-3048133,3048252-3049729
Length = 1245
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 138 KPDLNGYTNGIPAHKIVVNIFSCQNGRSTITQCIK 242
KP L G++ IPA K+V + S G+ST+ ++
Sbjct: 394 KPILQGFSLSIPAGKVVALVGSSGCGKSTVISLLQ 428
>01_01_0788 +
6111890-6112002,6112121-6112265,6113012-6113086,
6114171-6114250,6115500-6115569,6115664-6115759,
6116633-6116756,6116921-6116967,6117044-6117127,
6117199-6117252,6117451-6117551,6118744-6118834,
6119989-6120153,6121341-6121412,6122025-6122111,
6122899-6122952,6122992-6123062,6123882-6124029
Length = 558
Score = 28.7 bits (61), Expect = 3.8
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Frame = +3
Query: 237 IKEMCEEKIPYNRKSD------QITAQEFDDVISAVYPSIPDPDLALFSGPVCCTHGLLP 398
+KEM E IP ++S+ Q+ A D+++ +P+ P P+ + + V + G+L
Sbjct: 338 LKEMQPEGIPEMQRSNLVSCITQLKALGIDNILGFDWPASPSPEAMIRALEVLYSLGILD 397
Query: 399 WQIRLTEFISLSV-DYNLSV-ESFVGAMYKYSKCDQRF 506
+LT + V + LSV S G ++ + RF
Sbjct: 398 EDAKLTVPLGFQVAEIPLSVWVSMRGVKKEFDEAKLRF 435
>10_02_0086 -
5112095-5112185,5112487-5112599,5113325-5113431,
5113782-5113860,5114000-5114089,5114628-5114882,
5117025-5117174,5117634-5117933
Length = 394
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +3
Query: 150 NGYTNGIPAHKIVVN---IFSCQNGRSTITQCIKEMCEEKIPYNRKSDQITAQEFDDVIS 320
+ +T G+ A + + + C GR + + +KE+ +E+ + + +F DVI
Sbjct: 127 DAFTQGLFAFPLCIPGTAFYKCMQGRKNVIKMLKEILDER---KNTEEHHESVDFFDVIE 183
Query: 321 AVYPSIPD 344
V PD
Sbjct: 184 EVKAKNPD 191
>07_03_1614 +
28152812-28153204,28153301-28153585,28153676-28153993,
28154657-28154884,28155390-28155490,28156204-28156321,
28156445-28156726
Length = 574
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 208 RTDVPQLHNVSKKCVRKKFHIIEKVTKLPHKNLMM*YQQY 327
RT+V QLH + K C +K +KLPH + Q Y
Sbjct: 330 RTEVEQLHKIFKLCGSPTEEYWKK-SKLPHATIFKPQQPY 368
>04_03_0218 + 12780061-12780150,12780864-12781394
Length = 206
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 366 GPVCCTHGLLPWQIRLTEFISLSV 437
GP C PWQ + TEF+++ +
Sbjct: 17 GPRACRRKAEPWQSKSTEFVTIGI 40
>03_02_0996 -
13082540-13082818,13083107-13083221,13084135-13084235,
13084890-13085117,13085789-13086106,13086200-13086484,
13086566-13086913
Length = 557
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 208 RTDVPQLHNVSKKCVRKKFHIIEKVTKLPHKNLMM*YQQY 327
RT+V QLH + K C +K +KLPH + Q Y
Sbjct: 315 RTEVEQLHKIFKLCGSPTEEYWKK-SKLPHATIFKPQQPY 353
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,884,650
Number of Sequences: 37544
Number of extensions: 306921
Number of successful extensions: 688
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -