Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15e20f
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54218-2|CAA90956.1|  352|Caenorhabditis elegans Hypothetical pr...    40   0.001
AF024494-9|AAB70333.1|  336|Caenorhabditis elegans Serpentine re...    30   1.5  
Z81564-3|CAB04577.1|  536|Caenorhabditis elegans Hypothetical pr...    29   2.6  
L40996-1|AAA86431.1|  593|Caenorhabditis elegans GTP-binding pro...    29   3.4  
AF125969-2|AAD14761.1|  613|Caenorhabditis elegans Caenorhabditi...    29   3.4  
Z77136-1|CAB00880.1|  606|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defe...    28   6.0  
U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defe...    28   6.0  
U53154-3|AAC25852.1|  346|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-ty...    28   6.0  
Z78200-2|CAB01578.1|  588|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>Z54218-2|CAA90956.1|  352|Caenorhabditis elegans Hypothetical
           protein F37B12.3 protein.
          Length = 352

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 23/81 (28%), Positives = 39/81 (48%)
 Frame = +3

Query: 183 IVVNIFSCQNGRSTITQCIKEMCEEKIPYNRKSDQITAQEFDDVISAVYPSIPDPDLALF 362
           I VN+ S + G+  + +  K +C +  P       IT ++   ++   +  + DPD  L 
Sbjct: 252 IQVNVLSRKMGKDALVETCKTLCRDDEP-------ITVEKVSKILEEKF-HLSDPDFLLR 303

Query: 363 SGPVCCTHGLLPWQIRLTEFI 425
            G V    G  PW +R+TEF+
Sbjct: 304 IGNVPTLCGYPPWNLRITEFL 324


>AF024494-9|AAB70333.1|  336|Caenorhabditis elegans Serpentine
           receptor, class u protein27 protein.
          Length = 336

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -3

Query: 262 IFSSHISLIHCVIVERPF*QEKIFTTILCAGMPF--VYPFKSGFFDHFIHPGTPF 104
           IF   +S +  V++  P  QEKI   IL + +PF  +YP    FF  F+ P   +
Sbjct: 128 IFPFLVSTMRLVLIAYPQRQEKINRVILKSALPFILIYPM---FFTFFMWPAVGY 179


>Z81564-3|CAB04577.1|  536|Caenorhabditis elegans Hypothetical
           protein K05C4.3 protein.
          Length = 536

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
 Frame = -1

Query: 150 SNQVSLTILYTPEHLSCS-SQLH*KVFLL---DMKVDLIHHKNLK 28
           SNQ+  T+L     LSC  + +   VF L   D+K++LIHH+++K
Sbjct: 36  SNQIFATLLNNRFLLSCELNDIKGLVFNLTDVDLKMNLIHHESMK 80


>L40996-1|AAA86431.1|  593|Caenorhabditis elegans GTP-binding
           protein protein.
          Length = 593

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = -1

Query: 120 TPEHLSCSSQLH*KVFLLDMKVDL----IHHKNLKTVFRLLNS 4
           T EHLS +  LH  V+L+  K+D+    I  + +K + RL+ S
Sbjct: 270 TKEHLSLALSLHVPVYLVVTKIDMCPAYILEETMKNITRLVRS 312


>AF125969-2|AAD14761.1|  613|Caenorhabditis elegans Caenorhabditis
           gtp-binding proteinprotein 1 protein.
          Length = 613

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = -1

Query: 120 TPEHLSCSSQLH*KVFLLDMKVDL----IHHKNLKTVFRLLNS 4
           T EHLS +  LH  V+L+  K+D+    I  + +K + RL+ S
Sbjct: 269 TKEHLSLALSLHVPVYLVVTKIDMCPANILEETMKNITRLVRS 311


>Z77136-1|CAB00880.1|  606|Caenorhabditis elegans Hypothetical
           protein ZC376.1 protein.
          Length = 606

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +3

Query: 18  GIPFLSFYDVSGQLSYQEEKLFNAVE---KNKKGVPGCIKWSKKPDLNGYTNGIPAHKIV 188
           GIP++      G+L +++ +L  + E   + K   P C+ + +K   NG+   I    + 
Sbjct: 49  GIPYVE--PPIGELRFRKPRLLKSWEGVLETKDYKPACMSYWRKTFKNGFVGEISEDCLY 106

Query: 189 VNIFSCQ 209
            N+F+ Q
Sbjct: 107 ANVFTNQ 113


>U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying
           defective protein 19,isoform a protein.
          Length = 1783

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 335 GRVYC*YHIIKFLCGNLVTFSIIWNFFLTHFFDTLCN 225
           G + C Y+I+ F+CGN     I+ N FL    D L +
Sbjct: 676 GVIVCIYYIVLFICGNY----ILLNVFLAIAVDNLAD 708


>U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying
           defective protein 19,isoform b protein.
          Length = 1877

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 335 GRVYC*YHIIKFLCGNLVTFSIIWNFFLTHFFDTLCN 225
           G + C Y+I+ F+CGN     I+ N FL    D L +
Sbjct: 676 GVIVCIYYIVLFICGNY----ILLNVFLAIAVDNLAD 708


>U53154-3|AAC25852.1|  346|Caenorhabditis elegans Hypothetical
           protein C33G8.8 protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = +3

Query: 432 SVDYNLSVE---SFVGAMYKYSKCDQRFGT*LGSDSKLN 539
           ++DY+L+ E   SF+G++  Y KC   +G+ +  + +L+
Sbjct: 182 AIDYSLNQEQFQSFIGSIEYYKKCAHFYGSSMPEEKRLD 220


>U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical
           protein R02F2.4 protein.
          Length = 431

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 162 NGIPAHKIVVNIFSCQNGRSTITQC 236
           NG+ A      + SCQNGR  I +C
Sbjct: 315 NGLYALDCTPRVLSCQNGRENIFEC 339


>AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-type
           calcium channelalpha 1 subunit protein.
          Length = 1783

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 335 GRVYC*YHIIKFLCGNLVTFSIIWNFFLTHFFDTLCN 225
           G + C Y+I+ F+CGN     I+ N FL    D L +
Sbjct: 676 GVIVCIYYIVLFICGNY----ILLNVFLAIAVDNLAD 708


>Z78200-2|CAB01578.1|  588|Caenorhabditis elegans Hypothetical
           protein T04H1.2 protein.
          Length = 588

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -1

Query: 120 TPEHLSCSSQLH*KVFLLDMKVDLIHHKNLKTVFRLLNSI 1
           T EHL   + L+  +F+L  K+DL+  + LK + + ++++
Sbjct: 292 TREHLGLIAALNIPMFVLITKMDLVDRQGLKKIIKDVSNL 331


>U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical
           protein C33G8.12 protein.
          Length = 358

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/51 (21%), Positives = 26/51 (50%)
 Frame = +3

Query: 393 LPWQIRLTEFISLSVDYNLSVESFVGAMYKYSKCDQRFGT*LGSDSKLNSI 545
           + WQ+ +   I  S  Y    ++++G+   Y KC   +G+ +   +K++ +
Sbjct: 185 IKWQLLMEPAIDYSAQYE-QFKNYIGSNAYYQKCAYFYGSSMQKGNKISDV 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,109,056
Number of Sequences: 27780
Number of extensions: 318006
Number of successful extensions: 913
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)