Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15e17f
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    28   0.93 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   5.0  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    26   5.0  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    25   8.7  

>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = -2

Query: 225 LMNLNAVAIAVFSQILHLKTKQLNTIRTEDWSKVINLQRIVLNQY 91
           L  L++  ++V SQ+L +K   +++ + E WSK  N  +I+LN Y
Sbjct: 82  LSELSSQTLSVQSQLLKVKNS-IDSYKNE-WSKKTNDAQILLNSY 124


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 98   FKTIL*RFITFDQSSVLMVFNCFVFKCKIWLKTAIATAFKFIRTPSSLTFHIIDCF 265
            F +IL R + FD+   LM+F+  V   K+  +        FIR  + +     +CF
Sbjct: 1449 FISILRRLLEFDEVVELMMFDDLVNIFKLQGRARKTELHGFIRANAEMVLRSPECF 1504


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 235 TRCPNEFKCGRYRGFQPNFTFKNETIK 155
           TR P +F CG +    PN  F N TI+
Sbjct: 314 TRAPLKFACGWFAFIFPNVGFVNCTIE 340


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 183 ILHLKTKQLNTIRTEDWSKVINLQRIVL 100
           +LHL  KQ  T RTE  +K  + + +VL
Sbjct: 312 LLHLHGKQKQTTRTEVTAKFTSSRHVVL 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,005,580
Number of Sequences: 5004
Number of extensions: 34369
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)