Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15e17f
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119...    30   1.3  
03_06_0729 - 35771936-35772050,35772469-35772995                       29   2.9  
04_01_0272 + 3624910-3625247,3625286-3625853,3625920-3626895,362...    28   6.8  

>11_06_0458 +
           23808402-23808469,23808800-23809684,23810011-23811961,
           23812210-23812285,23813064-23813072,23813243-23813335,
           23813578-23813581,23813780-23814703,23814926-23815909,
           23816073-23816118,23816376-23816951,23817253-23817798,
           23817820-23818416
          Length = 2252

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = -2

Query: 228 VLMNLNAVAIAVFSQILHLKTKQLNTIRTEDWSKVIN-LQRIVLNQYYFLVKQNV 67
           V ++ + V   +F  IL+    ++ TIR+ D  +VIN L+  + N+ YF+V  ++
Sbjct: 272 VSLSQHPVMGMIFETILYQVNDEVGTIRSGDKEQVINELRAFLKNKRYFIVIDDI 326


>03_06_0729 - 35771936-35772050,35772469-35772995
          Length = 213

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = -2

Query: 228 VLMNLNAVAIAVFSQILHLKTKQLNTIRTEDWSKVINLQRIVLNQYYFLVKQN 70
           V   L+ +  A     + L +K ++ +  ++W+++ ++Q+  L   YF  KQN
Sbjct: 160 VFWKLHVLTAASAKAAIKLMSKHIDALTGDNWTRLAHMQQPKLKCKYFNQKQN 212


>04_01_0272 +
           3624910-3625247,3625286-3625853,3625920-3626895,
           3627053-3627087
          Length = 638

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 410 DSWLMYEMSRDVEAPRRAATSDFQHVSNV 496
           D W  Y  S DVE P +     F+H++ +
Sbjct: 375 DLWERYHYSGDVEIPEKVKEMAFKHINRI 403


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,038,891
Number of Sequences: 37544
Number of extensions: 189715
Number of successful extensions: 357
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)