Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15e11r
         (952 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    32   0.10 
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    31   0.18 
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.9  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    27   2.9  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   6.8  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    22   8.2  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    26   9.0  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     26   9.0  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    26   9.0  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    26   9.0  
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   9.0  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   9.0  

>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 22/103 (21%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
 Frame = -2

Query: 846 LSSSQNLRKLADENPKAKHILLYKAEIQDRKHELLSNEEEYLKILNIVDQVLNQIEEQLK 667
           +   +   K+ +   + ++  +++ E  D+KH+L   + E +K+L+I D    +I    +
Sbjct: 85  IEEKKETEKVEESELEPRYTRVFRDEDDDQKHQL---DSEAIKLLDIADHGNEEISMDSQ 141

Query: 666 LQPVGNWLC-CENFSIADINLAVLLQRLWELGLETRF-WSNGK 544
           L+  GN L   E  + A +   ++L+ + ++   T   W  G+
Sbjct: 142 LEITGNILSETEKMAYAGVCRLLILKMVDKIACFTTLPWYRGE 184


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = -2

Query: 849 DLSSSQN-LRKLADENPKAKHILLYKAEIQDRKHELLSNEEEYLKILNIVDQVLNQIEEQ 673
           DLS +   L +L  E  + KHIL   +E      EL    +  LKI   V + L +  E 
Sbjct: 286 DLSHNHRALARLEKEALRVKHILSANSEAIASIEELADGIDFRLKITRSVLESLCKDMED 345

Query: 672 LKLQPVGNWLCCENFSIADINLAVL 598
             ++P+   L   N + ++IN  +L
Sbjct: 346 AAVEPINKALKKANLTFSEINSIIL 370


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -2

Query: 588 LWELG-LETRFWSNGKRPLIESYFERVRQRESFKNTIPNLPQHLKMI 451
           L E+G LET F +N    L  +Y    RQ   F N I N+ Q L+ +
Sbjct: 758 LLEVGFLETGFLANDLENLTSTYRSSNRQLCDFSNRIGNINQKLEKL 804


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 548 PLLQKRVSNPNSQRRCKRTAKFMSAILKFSQHNQLPTGCNFNCSSIW 688
           P L K V +P      K  +     +L+ S+H  L  GC  + + IW
Sbjct: 164 PPLYKSVDSPLIVHSSKFMSDHSQKLLRNSKHGILVVGCGQSAAEIW 210


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = +3

Query: 576 LIPKDVARGQPNLCLQY*NFRSITNYRQVVILTAPLFGSELGQQCLEFLNIPLHYSEVRV 755
           LIPKD+ R   N  + Y    ++ N  +  +  A +    L  QC EF  I    +E R 
Sbjct: 785 LIPKDLGRIASNYYINYQTVSTLNNLLKSKMSEADIIA--LLSQCSEFSQIKSRENEHR- 841

Query: 756 FDLES 770
            +LES
Sbjct: 842 -ELES 845


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 22.2 bits (45), Expect(2) = 8.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 828 LRKLADENPKAKHILLY 778
           L+KL DENPK    L +
Sbjct: 480 LQKLLDENPKVNASLFF 496



 Score = 21.8 bits (44), Expect(2) = 8.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 693 LNQIEEQLKLQPVGNWLCCENFSIA 619
           + Q   QL + P GN++C + F  A
Sbjct: 499 IRQSVVQLMIDPFGNYMCQKLFVYA 523


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 7/20 (35%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +1

Query: 433 WRWSRNY-HFKVLWQIWNSI 489
           W + R+Y +FK++W +W ++
Sbjct: 287 WIYMRHYLNFKIMWAVWGTM 306


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 601 PLATSLGIRIRNTFLE*RKETLD 533
           P A+ L  ++RNTF++  +ET+D
Sbjct: 582 PFASQLAKQLRNTFVKLMQETMD 604


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 735 EEEYLKILNIVDQVLNQIEEQLK 667
           EE+Y +++ +VDQ L+Q  E+ K
Sbjct: 405 EEQYQQMIQLVDQKLSQYAEKAK 427


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1379

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 18/81 (22%), Positives = 37/81 (45%)
 Frame = -2

Query: 885  FIFASKRDLKTGDLSSSQNLRKLADENPKAKHILLYKAEIQDRKHELLSNEEEYLKILNI 706
            ++ +     K  DL  +  +R+L   +     +L    ++ DR H  +   +E++  + +
Sbjct: 1245 YLLSKSEYSKPNDLICNIVVRELWSRSGAPTSVLAKIYDLVDRHHTGVLGRDEFIVGMFL 1304

Query: 705  VDQVLNQIEEQLKLQPVGNWL 643
            +DQ L   +  LK+ P   WL
Sbjct: 1305 IDQYLKGRKLPLKV-PDSVWL 1324


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -3

Query: 221 YVIFYISKLIFTLKSKNPKGFKILFMVGSGLTVPLALL 108
           YV++++   +     K P  +K LF++  G+T  + +L
Sbjct: 84  YVMYFLPLEVGLFNPKTPNKWKFLFILNIGVTALITVL 121


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 257 SVNFDNNQSYSIFIAISKANKNHNMNLNSDK 349
           ++ FDNN+ +S+F+ I+      N+ + SD+
Sbjct: 335 TLGFDNNEIHSLFLIIASILHIGNIEVASDR 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,614,966
Number of Sequences: 5004
Number of extensions: 73829
Number of successful extensions: 245
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)