Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15e11f
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo...    48   8e-07
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    31   0.17 

>SPCC965.07c |gst2||glutathione S-transferase
           Gst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 48.4 bits (110), Expect = 8e-07
 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
 Frame = +1

Query: 259 KVLMALYEKNIDFEPLIVDITKGEQYSSWFLEINPRGEIPVL---KVKDALIPDSTRILD 429
           KV++AL E N+ +E +  D  KGEQ     L +NP G +P L   K  D  I +S  IL 
Sbjct: 17  KVVLALKELNLSYEQIFYDFQKGEQKCKEHLALNPNGRVPTLVDHKNNDYTIWESDAILI 76

Query: 430 YLEFYLDSD 456
           YL    D+D
Sbjct: 77  YLADKYDTD 85


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 26/96 (27%), Positives = 47/96 (48%)
 Frame = +1

Query: 262 VLMALYEKNIDFEPLIVDITKGEQYSSWFLEINPRGEIPVLKVKDALIPDSTRILDYLEF 441
           VL A+ E + +F  LIV  T+G+  SS    ++   E+  LK ++ +       +++  F
Sbjct: 158 VLSAVQEVD-EFGELIVRTTQGQGISSVLSMVHDLSEVDSLKTRNEVKKSLQSFMNF--F 214

Query: 442 YLDSDLVPLINVSKDTKVVTTINKFRELIDALPAGV 549
           + D + V   +VS+D      +N  R L  + P G+
Sbjct: 215 FSDQERVFAADVSQD-----ALNVMRALCTSHPRGI 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,165
Number of Sequences: 5004
Number of extensions: 45610
Number of successful extensions: 124
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)