Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15e04f
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0503 - 3596664-3596837,3597647-3598069,3598362-3598595,359...    30   1.2  
09_04_0745 + 19884868-19886000,19886110-19886309,19886422-198866...    29   2.2  

>06_01_0503 -
           3596664-3596837,3597647-3598069,3598362-3598595,
           3598720-3598993,3599390-3599523,3599572-3599634,
           3599759-3599846,3599919-3599989,3600898-3601010,
           3601836-3602004,3602580-3602671,3602819-3603295,
           3603736-3604090
          Length = 888

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 113 RQDRIRMGSRRRTVPLPAVTAHGEP*GSSQRLWSH 217
           R+  +R+  RRR  PLPA  A   P   S ++WS+
Sbjct: 5   RESLVRLIGRRRRSPLPAALALAVPPSRSLQVWSN 39


>09_04_0745 +
           19884868-19886000,19886110-19886309,19886422-19886666,
           19886880-19887668
          Length = 788

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 564 PNSYFQERYHWSRFFPNRWQSDGNRR 487
           P S+  +  H  R +P RW+S G+RR
Sbjct: 14  PVSWCHQDRHGRRHYPRRWRSSGSRR 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,303,504
Number of Sequences: 37544
Number of extensions: 345839
Number of successful extensions: 857
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)