Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15e02f
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    28   0.86 
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    28   1.1  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    27   2.0  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    27   2.6  
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.6  
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    25   6.1  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    25   6.1  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    25   8.0  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.0  

>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 28.3 bits (60), Expect = 0.86
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 331 SGTYELRSLVTHVADNSRSLTRQRFHLTLQEIKPRNSQIVEESEK 465
           S   +L+S + H  +   S+T+QR     QEI+   ++   + EK
Sbjct: 397 SAVEQLKSRIAHFKEQQDSVTKQRIEKAKQEIEKLEAKYNSKEEK 441


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = +1

Query: 118 NFLTNDLIGKSLSIPK-SFLD--TLVSCHVIFPNR 213
           +F T D+IG  +S+PK SF    TL SCH   P R
Sbjct: 450 SFGTGDIIGLHISLPKPSFAQHTTLPSCHDRIPIR 484


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +1

Query: 298 AIGFRGAAVSLSGTYELRSLVTHVADNSRSLTRQRFHLTLQEIKPRNSQIVEE 456
           A+   G A + +GT++ + L++H  D  R++     H T  +I+ R+   + E
Sbjct: 26  AVDLNGNAFAPNGTFQKKDLISHKNDFERTMRHDVLH-TNPKIEVRSETHIYE 77


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 33  QILVFVCSCSGYCSSFGRNRDHHTRHI 113
           ++L FVCSC    S +   R H+ R I
Sbjct: 171 RLLEFVCSCRLPASKYDHPRSHYIRRI 197


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 15/72 (20%), Positives = 31/72 (43%)
 Frame = +1

Query: 94  ITIPDISFNFLTNDLIGKSLSIPKSFLDTLVSCHVIFPNRVMYEAFPNNNLPAGNIFFLE 273
           +T+  I   F     +   + +P+  +   V   ++ P  V+      N++ + N+F + 
Sbjct: 171 VTLLKIDIYFFLGVTVQYVMVLPEDAVVEFVLTILVLPLTVLILTLSFNSVSSENMFLMM 230

Query: 274 AVQPFTSCAIGF 309
            VQ F  C I +
Sbjct: 231 TVQFFYVCGIPY 242


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +1

Query: 148 SLSIPKSFLDTLVSCHVIFPNRVMYEAFPNNNLP---AGNIFFLEAVQPFTSCAIG 306
           S+S+ KSFL +    H + PN      + N+N P    G +  + A Q +T+ + G
Sbjct: 325 SISMVKSFLVSADMAHAMHPN--YSSRYENSNTPFLNKGTVIKVNANQRYTTNSAG 378


>SPBC1718.02 |hop1||linear element associated protein
          Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 93 LCYGRSLSNSRCKSKQIQEFGHF 25
          LCY R+L N  C  K   E  HF
Sbjct: 28 LCYKRALFNENCYKKVNFEIEHF 50


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 18/75 (24%), Positives = 33/75 (44%)
 Frame = -3

Query: 288 EGLNCFQEEYITGRQIVVRESFVHYTVREYDMARYQSVQEGLGDGQGFSDEVIC*KIKGY 109
           E L  F++E    + +++  S+     +  ++  Y +        + F DE     + G+
Sbjct: 684 ESLIRFEDEIREWKSLMMHNSYTVSVKKHPELEGYNAKLARFE--RSFLDEA---GLPGH 738

Query: 108 VWYGDLCYGRSLSNS 64
            WY  L YG +L NS
Sbjct: 739 EWYKHLIYGPNLRNS 753


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 97  TIPDISFNFLTNDLIGKSLSIPKSFLDTLVS 189
           T P   F+ +  D  GK  ++P + LDT ++
Sbjct: 438 TFPKPKFSDILRDYWGKKANLPTALLDTSIN 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,802
Number of Sequences: 5004
Number of extensions: 48390
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)