Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15e02f
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1652 + 38918159-38918377,38918502-38919428                       30   1.5  
07_03_1794 - 29580767-29584189                                         27   8.2  
07_01_0719 + 5495271-5495726,5495894-5496949                           27   8.2  
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412...    27   8.2  

>01_06_1652 + 38918159-38918377,38918502-38919428
          Length = 381

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 214 VMYEAFPNNNLPAGNIFFLEAVQPFTSCAIGFRGAAVSLSG 336
           ++Y   P+N  P+GN  +L   Q +TS A+ +     S +G
Sbjct: 174 LIYAVGPSNTNPSGNGDYLAQHQVYTSAAVNYAAGTTSSAG 214


>07_03_1794 - 29580767-29584189
          Length = 1140

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/30 (36%), Positives = 22/30 (73%)
 Frame = -3

Query: 246  QIVVRESFVHYTVREYDMARYQSVQEGLGD 157
            Q +VR S   + ++++D ++YQ +Q+G+GD
Sbjct: 926  QFLVRFSMACHRMQDFD-SKYQELQKGMGD 954


>07_01_0719 + 5495271-5495726,5495894-5496949
          Length = 503

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 135 PHRKILVHPQVLLGHFGIVPCHIP*PCNV 221
           P ++ L HP+    HF + P  IP P NV
Sbjct: 171 PRQENLAHPRTKTEHFMVQPPWIPFPSNV 199


>02_01_0561 +
           4120268-4120339,4121462-4121588,4121715-4121770,
           4121841-4121912,4122017-4122128,4122247-4122284,
           4122412-4122513,4122619-4122675,4122755-4122826,
           4122992-4123093,4123210-4123405,4123988-4124094,
           4124497-4124691,4124771-4124857,4124905-4124913,
           4125599-4125703,4126067-4126164,4126250-4126328,
           4126912-4127000,4127086-4127200
          Length = 629

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 266 KNILPAGKLLLGKASYITRLGNMTWHDTKVSKKDLGMDKDFPM 138
           K  LP G +  GK SYI   G  +  DT +  +  G+ K+F M
Sbjct: 170 KVALPPGAM--GKISYIAPAGQYSLQDTVLELEFQGIKKEFTM 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,659,520
Number of Sequences: 37544
Number of extensions: 303691
Number of successful extensions: 654
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)