Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15d24r
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein |Sch...   314   7e-87
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    29   1.1  
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ...    27   3.2  
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    27   4.3  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    26   5.6  
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||...    26   7.4  
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|...    26   7.4  

>SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score =  314 bits (772), Expect = 7e-87
 Identities = 147/178 (82%), Positives = 165/178 (92%)
 Frame = -2

Query: 597 GILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 418
           GI+P LQNIV+TVNLDC+LDLK IALHARNAEYNPKRFAAVIMRIREP++TALIF+SGKM
Sbjct: 53  GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKSTALIFASGKM 112

Query: 417 VCTGAKSEEDSRLAARKYARIIQKLGFTAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 238
           V  G KSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIRLEGL  +HG 
Sbjct: 113 VVLGGKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYSHGT 172

Query: 237 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVREEIYEAFDNIYPILKSFKK 64
           FSSYEPELFPGLIYRMVKP++VLLIFVSGK+VLTGAKVREEIY+AF+ IYP+L  F+K
Sbjct: 173 FSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEIYQAFEAIYPVLSEFRK 230


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
 Frame = +3

Query: 660 VDLIDFLQL----SSETSYFVEFEAASSVAELHSWLLVH 764
           +DL D+++L    S + S  + F+ A +VA LHS+ ++H
Sbjct: 596 IDLFDYIELKPSISEKESKAIFFQIALAVAHLHSFDIIH 634


>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 216 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVREEIYEAFDNIY 88
           ++PG+IYR   PR     F+    + T   +R+E Y   D  Y
Sbjct: 65  VYPGIIYRSACPRASNFNFLESLHIRTIISLRQEEYSEEDLHY 107


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -1

Query: 733 TDDAASNSTKYDVSDDSCRKSIKSTNAKPS*SCPNDSSDTTLCRPWNFTT 584
           TDD      +    DDS ++    +N   S S   D  D++LC+P NF T
Sbjct: 196 TDDGEEVCIRLAKVDDSFQRKHTVSNFSVSKS---DDHDSSLCQPPNFVT 242


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 760 TNSQLCN-SATDDAASNSTKYDVSDDSCRKSI 668
           T SQL + SA +D+ SNST+YD    S  +S+
Sbjct: 334 TRSQLNDLSAENDSTSNSTEYDDQLQSILRSL 365


>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 267 LEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVL 169
           + G+V+THG  S  E  +F  L     KP +V+
Sbjct: 117 VHGIVITHGTDSLEETAMFLDLTISTAKPIVVV 149


>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 267 LEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVL 169
           + G+V+THG  S  E  +F  L     KP +V+
Sbjct: 117 VHGIVITHGTDSLEETAMFLDLTISTAKPIVVV 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,359,887
Number of Sequences: 5004
Number of extensions: 69225
Number of successful extensions: 202
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)