Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15d24r
         (823 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    25   1.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   1.1  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    25   1.1  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    25   1.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   2.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   6.0  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +1

Query: 64  FFETFKYWIYIVKGFIYFF-PYFGPSQYN 147
           ++     W+YI+ G +Y+F     P  YN
Sbjct: 301 YYPDLNEWLYILSGCLYYFSTTINPILYN 329


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 708 VEFEAASSVAELHSWL 755
           +EF+  +SV ELHSW+
Sbjct: 80  MEFDDWTSVMELHSWM 95



 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 456 PRTTALIFSSGKMVC 412
           P TT L+FSSG + C
Sbjct: 145 PPTTCLVFSSGSVSC 159


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 414 CTGAKSEEDSRLAARKYAR-IIQKLGFTAKFLDFKIQNMVGS 292
           C    ++ED  + ARKY    ++K+    KFLD +++ + G+
Sbjct: 99  CVSKAADEDECMVARKYIDCALEKM----KFLDDELEKIAGN 136


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 414 CTGAKSEEDSRLAARKYAR-IIQKLGFTAKFLDFKIQNMVGS 292
           C    ++ED  + ARKY    ++K+    KFLD +++ + G+
Sbjct: 99  CVSKAADEDECMVARKYIDCALEKM----KFLDDELEKIAGN 136


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 603 DPGILPQLQNIVSTVNLD 550
           +P I+P++QN   T N D
Sbjct: 640 EPPIMPRVQNATDTTNFD 657


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = +1

Query: 67  FETFKYWIYIVKGFIYFF-PYFGPSQYN 147
           ++    W+Y + G +Y+F     P  YN
Sbjct: 290 YDDINQWVYPLTGCLYYFSTTINPILYN 317


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,998
Number of Sequences: 438
Number of extensions: 4415
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)