Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15d24f
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81110-9|CAB03261.2|  353|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z81094-8|CAB03155.2|  353|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z98866-10|CAE54923.1| 1089|Caenorhabditis elegans Hypothetical p...    27   7.4  
Z98866-9|CAB11550.4| 1139|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z71265-5|CAA95836.1|  481|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AL032649-4|CAA21703.2|  511|Caenorhabditis elegans Hypothetical ...    27   7.4  
AL032649-3|CAA21702.2|  502|Caenorhabditis elegans Hypothetical ...    27   7.4  
AF034078-1|AAC02976.1|  815|Caenorhabditis elegans putative E1-E...    27   7.4  

>Z81110-9|CAB03261.2|  353|Caenorhabditis elegans Hypothetical
           protein T01D3.1 protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 41  YLHNVTCVDQLSFNCFNSL 97
           + HNVTC+D L  +C   L
Sbjct: 49  HFHNVTCIDALDIHCLKEL 67


>Z81094-8|CAB03155.2|  353|Caenorhabditis elegans Hypothetical
           protein T01D3.1 protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 41  YLHNVTCVDQLSFNCFNSL 97
           + HNVTC+D L  +C   L
Sbjct: 49  HFHNVTCIDALDIHCLKEL 67


>Z98866-10|CAE54923.1| 1089|Caenorhabditis elegans Hypothetical
           protein Y49E10.11b protein.
          Length = 1089

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 434 ANCRIWRNHGDSTEVYAHICTNSQLCNSATDDAASNSTKYD 556
           A+ R+W   GD  E   +I  +  LC++ T+    + T Y+
Sbjct: 641 ADIRVWMLTGDKRETAINIAHSCALCHTNTELLIVDKTTYE 681


>Z98866-9|CAB11550.4| 1139|Caenorhabditis elegans Hypothetical
           protein Y49E10.11a protein.
          Length = 1139

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 434 ANCRIWRNHGDSTEVYAHICTNSQLCNSATDDAASNSTKYD 556
           A+ R+W   GD  E   +I  +  LC++ T+    + T Y+
Sbjct: 641 ADIRVWMLTGDKRETAINIAHSCALCHTNTELLIVDKTTYE 681


>Z71265-5|CAA95836.1|  481|Caenorhabditis elegans Hypothetical
           protein M05B5.6 protein.
          Length = 481

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 347 LVFFRLMQWCTYSRYVIRTWQHMIHFS-FFTFFIWKLRVSVLVSVDLTVYLLI 192
           LVFF L+ W  +SR + + +   I    FF F + K  +   ++  ++ + ++
Sbjct: 101 LVFFLLLAWHVFSRNLFKDFLITIFTGIFFMFLVLKGTIKARITKSVSTWFIV 153


>AL032649-4|CAA21703.2|  511|Caenorhabditis elegans Hypothetical
           protein Y55D9A.2b protein.
          Length = 511

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +1

Query: 325 CINLKKTSKSCLMQCNSNSFNSNSP 399
           C +++K   +C++Q N N+  ++SP
Sbjct: 267 CYSIEKLEDACILQVNGNNVKTSSP 291


>AL032649-3|CAA21702.2|  502|Caenorhabditis elegans Hypothetical
           protein Y55D9A.2a protein.
          Length = 502

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +1

Query: 325 CINLKKTSKSCLMQCNSNSFNSNSP 399
           C +++K   +C++Q N N+  ++SP
Sbjct: 267 CYSIEKLEDACILQVNGNNVKTSSP 291


>AF034078-1|AAC02976.1|  815|Caenorhabditis elegans putative E1-E2
           ATPase protein.
          Length = 815

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 434 ANCRIWRNHGDSTEVYAHICTNSQLCNSATDDAASNSTKYD 556
           A+ R+W   GD  E   +I  +  LC++ T+    + T Y+
Sbjct: 317 ADIRVWMLTGDKRETAINIAHSCALCHTNTELLIVDKTTYE 357


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,677,161
Number of Sequences: 27780
Number of extensions: 218304
Number of successful extensions: 584
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)