Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15d18f
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 99 5e-22
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 30 0.25
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 27 2.3
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 27 3.0
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual 26 5.3
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch... 25 7.0
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 7.0
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 9.3
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch... 25 9.3
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 99.1 bits (236), Expect = 5e-22
Identities = 48/105 (45%), Positives = 67/105 (63%)
Frame = +3
Query: 327 NYPKKLVWRNIILFTYLHIAALYGGYLFLFHAKWQTDLFAYILYVMSGLGITAGAHRLWA 506
N+ + L W + +L L + A+YG +F + +T +FA I Y SGLGITAG HRLW+
Sbjct: 57 NWWRHLNWLHCMLIFGLPMIAIYG--VFTTPLQTKTLIFAIIYYAYSGLGITAGYHRLWS 114
Query: 507 HKSYKAKWPLRVILIIFNSLAFQDSALDWARDHRMHHKYSETDAD 641
H++YKAK PL L + AF+ S W+RDHR HH+Y++TD D
Sbjct: 115 HRAYKAKKPLEYFLAAGGAAAFEGSIRWWSRDHRAHHRYTDTDKD 159
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 30.3 bits (65), Expect = 0.25
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +3
Query: 372 YLHIAALYGGYLFLFHAKWQTDLFAYILYVMSGLGITAGAHRLWAHKSYKAKWPLRVILI 551
Y+ +A L ++ LF T L IL +++ LGI A + +AH WP R++L
Sbjct: 514 YILLACLILFFMTLFSRSSSTILPPSILLILTFLGIVASLYYCFAHGLQFINWP-RLLLP 572
Query: 552 IF 557
F
Sbjct: 573 SF 574
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 330 YPKKLVWRNIILFTYLHIAALYGGYLFLFHAKWQTDLFAYILYVM 464
Y KKL W I+ F Y H + Y+ L H ++F+ Y++
Sbjct: 440 YTKKL-WSLIVNFEYTHAPLIPDAYMKLLHLYEFPNIFSKYDYIL 483
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 281 YSRLRTVQHTCTASRQLPKETSLEEYNTFYIPSYCCVVWRLPF 409
YSRL H C SR++ ET+ ++ N C+ + L +
Sbjct: 329 YSRLLLFAHQCIPSREITFETTSKDGNLLNAIRIFCLYFDLDY 371
>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Frame = +3
Query: 303 STPVQQADNYPKK--LVWRNIIL---FTYLHIAALYGGYLFLFHAKWQTDLF 443
S+P Q ++ K +VW ++++ F+Y+ AA Y + L+ W+ L+
Sbjct: 64 SSPPPQTQSFLKTVLIVWFSLLVTSYFSYMPFAASYFSFTMLYIWSWKHPLY 115
>SPAC17G8.11c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Frame = +3
Query: 390 LYGGYLFLFHAKWQTDL------FAYILYVMSGLGITAGAHRLWAHKSYKAKW 530
L+GG + LF ++TDL + + +Y I H+ W KW
Sbjct: 22 LFGGPMMLFFINYKTDLLKVDDVYNHEIYSNQSAAIPKIIHQTWKTNEIPEKW 74
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 81 RLIINNTIFTYLASVLLFTNRRIDVICE*CIFFKRLINSYWY 206
R + N FT + L F N+ + VI C+F + SY++
Sbjct: 663 RKYLANKYFTSNFAPLKFDNQALSVIIWVCVFTCKFAESYFF 704
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/40 (27%), Positives = 17/40 (42%)
Frame = +1
Query: 451 YCM*CQDLASQQVHIDYGHINHTKQSGLYVLSLSSSIPWL 570
+C+ C D+ H H+ H K+ +Y L WL
Sbjct: 1365 FCLSCVDMLKNLEHELIKHLKHMKKESVYSKKLEEEY-WL 1403
>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 505
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -3
Query: 300 TVLSLEYQHHFQREHHLHPLHWAPYWSVISRYTSSYLLTV*KKYTI 163
+++S+ F R HHL+ LHW S + Y + ++L + Y++
Sbjct: 336 SIISIIQTFIFDR-HHLYTLHWT---SEMGGYLAGFILVMFLLYSL 377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,869
Number of Sequences: 5004
Number of extensions: 60860
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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