Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15d17r
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...    54   3e-08
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    30   0.48 
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    26   5.9  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    26   5.9  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    26   7.8  
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    26   7.8  

>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 25/46 (54%), Positives = 31/46 (67%)
 Frame = -1

Query: 851 TAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKE 714
           TAA   G  +GAL+V +D LGA+GSGT +LL  T IY Y+E   KE
Sbjct: 419 TAAWLSGAVVGALAVASDLLGALGSGTAVLLCTTTIYGYYEQLQKE 464


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -1

Query: 848 AAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEMG 699
           AA      +  LSV+A    +   G G+L+A  ++Y  FE+ V     +G
Sbjct: 424 AAKLSAFFVSILSVIAGIFAST-FGVGVLIASALVYASFEMIVGANTSLG 472


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 236 SFITNLYRYHITGLRFKKFTSLCLCISYDKMLNLSWW 346
           SF+T LY +  T + +    +  L +    ML L WW
Sbjct: 635 SFLTKLYTFPFTIITWLMHPTHLLLVVMFSMLVLQWW 671


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -1

Query: 833 GLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ--AEMGGMSTLL 681
           G  IGA   +A  L      TGI++ + I+ ++F    +      MGG+S++L
Sbjct: 331 GSLIGAPKTVAALLSGEMKDTGIVITLNILEKFFSRSERAMMVRTMGGVSSML 383


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 428 EMNFIIKNTLQICFLFLYIYTLSILKF 348
           EM+FI+ NTL I    L+ + L I+K+
Sbjct: 142 EMDFILFNTLGIGAFILHDHLLGIIKY 168


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 650 DRCVQLRFYCRFCSESTSLGV 588
           DRC++L  YC  C   ++ G+
Sbjct: 326 DRCIELYKYCEKCGIKSAFGI 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,412,906
Number of Sequences: 5004
Number of extensions: 70715
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)