Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15d17r
         (851 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   2.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   4.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   4.7  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   4.7  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +1

Query: 130 NSQQNNTCXIQHK-QNTCVD 186
           NS +NNTC I +   N CV+
Sbjct: 165 NSPENNTCSISNSYTNGCVE 184


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 436 LAHHPRTRRHAHNTTPVGALPSTQ 507
           +  H +++ H H T+P    PS+Q
Sbjct: 663 IVQHTQSQLHLHLTSPPARSPSSQ 686


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 279 RRPVIWYLYKLVIKLYHR 226
           R PV + +YK ++  YH+
Sbjct: 413 RDPVFFSIYKTILDYYHK 430


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 279 RRPVIWYLYKLVIKLYHR 226
           R PV + +YK ++  YH+
Sbjct: 413 RDPVFFSIYKTILDYYHK 430


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 279 RRPVIWYLYKLVIKLYHR 226
           R PV + +YK ++  YH+
Sbjct: 39  RDPVFFSIYKTILDYYHK 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,682
Number of Sequences: 438
Number of extensions: 5480
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)