Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15d17f
(623 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC026179-1|AAH26179.1| 418|Homo sapiens SEC61A2 protein protein. 313 4e-85
AF346603-1|AAK29084.1| 476|Homo sapiens Sec61 alpha form 2 prot... 313 4e-85
AK022640-1|BAB14148.1| 437|Homo sapiens protein ( Homo sapiens ... 308 8e-84
AF346602-1|AAK29083.1| 476|Homo sapiens Sec61 alpha form 1 prot... 306 3e-83
AF084458-1|AAD39847.1| 476|Homo sapiens sec61 homolog protein. 306 3e-83
AK074928-1|BAC11298.1| 356|Homo sapiens protein ( Homo sapiens ... 69 1e-11
U57627-1|AAB03839.2| 901|Homo sapiens ocrl1 protein. 31 4.4
M88162-1|AAA59964.2| 968|Homo sapiens Lowe oculocerebrorenal sy... 31 4.4
BC130612-1|AAI30613.1| 893|Homo sapiens oculocerebrorenal syndr... 31 4.4
BC094726-1|AAH94726.1| 893|Homo sapiens oculocerebrorenal syndr... 31 4.4
AL662877-2|CAI41087.1| 893|Homo sapiens oculocerebrorenal syndr... 31 4.4
AL662877-1|CAI41088.1| 901|Homo sapiens oculocerebrorenal syndr... 31 4.4
AL138745-5|CAI42615.1| 893|Homo sapiens oculocerebrorenal syndr... 31 4.4
AL138745-4|CAI42616.1| 901|Homo sapiens oculocerebrorenal syndr... 31 4.4
AL022162-2|CAI95696.1| 893|Homo sapiens oculocerebrorenal syndr... 31 4.4
AL022162-1|CAI95695.1| 901|Homo sapiens oculocerebrorenal syndr... 31 4.4
>BC026179-1|AAH26179.1| 418|Homo sapiens SEC61A2 protein protein.
Length = 418
Score = 313 bits (768), Expect = 4e-85
Identities = 146/156 (93%), Positives = 155/156 (99%)
Frame = +2
Query: 155 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 334
MGIKFLEVIKPFC++LPEI KPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 335 PFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 514
PFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 515 MVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLF 622
M+IT+GQAIVYVMTGMYG+P+E+GAG+CLLIIIQLF
Sbjct: 121 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLF 156
>AF346603-1|AAK29084.1| 476|Homo sapiens Sec61 alpha form 2
protein.
Length = 476
Score = 313 bits (768), Expect = 4e-85
Identities = 146/156 (93%), Positives = 155/156 (99%)
Frame = +2
Query: 155 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 334
MGIKFLEVIKPFC++LPEI KPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 335 PFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 514
PFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 515 MVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLF 622
M+IT+GQAIVYVMTGMYG+P+E+GAG+CLLIIIQLF
Sbjct: 121 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLF 156
>AK022640-1|BAB14148.1| 437|Homo sapiens protein ( Homo sapiens
cDNA FLJ12578 fis, clone NT2RM4001054, moderately
similar to Homo sapiens sec61 homolog mRNA. ).
Length = 437
Score = 308 bits (757), Expect = 8e-84
Identities = 144/156 (92%), Positives = 154/156 (98%)
Frame = +2
Query: 155 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 334
MGIKFLEVIKPFC++ PEI KPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MGIKFLEVIKPFCAVPPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 335 PFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 514
PFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 515 MVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLF 622
M+IT+GQAIVYV+TGMYG+P+E+GAG+CLLIIIQLF
Sbjct: 121 MIITIGQAIVYVITGMYGDPAEMGAGICLLIIIQLF 156
>AF346602-1|AAK29083.1| 476|Homo sapiens Sec61 alpha form 1
protein.
Length = 476
Score = 306 bits (752), Expect = 3e-83
Identities = 144/156 (92%), Positives = 152/156 (97%)
Frame = +2
Query: 155 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 334
M IKFLEVIKPFC ILPEI KPERKIQF+EKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 335 PFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 514
PFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 515 MVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLF 622
M+IT+GQ+IVYVMTGMYG+PSE+GAG+CLLI IQLF
Sbjct: 121 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLF 156
>AF084458-1|AAD39847.1| 476|Homo sapiens sec61 homolog protein.
Length = 476
Score = 306 bits (752), Expect = 3e-83
Identities = 144/156 (92%), Positives = 152/156 (97%)
Frame = +2
Query: 155 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 334
M IKFLEVIKPFC ILPEI KPERKIQF+EKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 335 PFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 514
PFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 515 MVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLF 622
M+IT+GQ+IVYVMTGMYG+PSE+GAG+CLLI IQLF
Sbjct: 121 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLF 156
>AK074928-1|BAC11298.1| 356|Homo sapiens protein ( Homo sapiens
cDNA FLJ90447 fis, clone NT2RP3001240, highly similar to
Canis familiaris sec61 homologue mRNA. ).
Length = 356
Score = 69.3 bits (162), Expect = 1e-11
Identities = 29/36 (80%), Positives = 35/36 (97%)
Frame = +2
Query: 515 MVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLF 622
M+IT+GQ+IVYVMTGMYG+PSE+GAG+CLLI IQLF
Sbjct: 1 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLF 36
>U57627-1|AAB03839.2| 901|Homo sapiens ocrl1 protein.
Length = 901
Score = 30.7 bits (66), Expect = 4.4
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +1
Query: 232 SIPRESIMDSNH-----IIYFLSMLPDSLIWYNVIRQCRSLLLDP--CNSCIKQ 372
SIP E+I SNH ++ FL LP+ +I Y + ++C DP C I Q
Sbjct: 775 SIP-ETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQ 827
>M88162-1|AAA59964.2| 968|Homo sapiens Lowe oculocerebrorenal
syndrome protein protein.
Length = 968
Score = 30.7 bits (66), Expect = 4.4
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +1
Query: 232 SIPRESIMDSNH-----IIYFLSMLPDSLIWYNVIRQCRSLLLDP--CNSCIKQ 372
SIP E+I SNH ++ FL LP+ +I Y + ++C DP C I Q
Sbjct: 842 SIP-ETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQ 894
>BC130612-1|AAI30613.1| 893|Homo sapiens oculocerebrorenal syndrome
of Lowe protein.
Length = 893
Score = 30.7 bits (66), Expect = 4.4
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +1
Query: 232 SIPRESIMDSNH-----IIYFLSMLPDSLIWYNVIRQCRSLLLDP--CNSCIKQ 372
SIP E+I SNH ++ FL LP+ +I Y + ++C DP C I Q
Sbjct: 767 SIP-ETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQ 819
>BC094726-1|AAH94726.1| 893|Homo sapiens oculocerebrorenal syndrome
of Lowe protein.
Length = 893
Score = 30.7 bits (66), Expect = 4.4
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +1
Query: 232 SIPRESIMDSNH-----IIYFLSMLPDSLIWYNVIRQCRSLLLDP--CNSCIKQ 372
SIP E+I SNH ++ FL LP+ +I Y + ++C DP C I Q
Sbjct: 767 SIP-ETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQ 819
>AL662877-2|CAI41087.1| 893|Homo sapiens oculocerebrorenal syndrome
of Lowe protein.
Length = 893
Score = 30.7 bits (66), Expect = 4.4
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +1
Query: 232 SIPRESIMDSNH-----IIYFLSMLPDSLIWYNVIRQCRSLLLDP--CNSCIKQ 372
SIP E+I SNH ++ FL LP+ +I Y + ++C DP C I Q
Sbjct: 767 SIP-ETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQ 819
>AL662877-1|CAI41088.1| 901|Homo sapiens oculocerebrorenal syndrome
of Lowe protein.
Length = 901
Score = 30.7 bits (66), Expect = 4.4
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +1
Query: 232 SIPRESIMDSNH-----IIYFLSMLPDSLIWYNVIRQCRSLLLDP--CNSCIKQ 372
SIP E+I SNH ++ FL LP+ +I Y + ++C DP C I Q
Sbjct: 775 SIP-ETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQ 827
>AL138745-5|CAI42615.1| 893|Homo sapiens oculocerebrorenal syndrome
of Lowe protein.
Length = 893
Score = 30.7 bits (66), Expect = 4.4
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +1
Query: 232 SIPRESIMDSNH-----IIYFLSMLPDSLIWYNVIRQCRSLLLDP--CNSCIKQ 372
SIP E+I SNH ++ FL LP+ +I Y + ++C DP C I Q
Sbjct: 767 SIP-ETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQ 819
>AL138745-4|CAI42616.1| 901|Homo sapiens oculocerebrorenal syndrome
of Lowe protein.
Length = 901
Score = 30.7 bits (66), Expect = 4.4
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +1
Query: 232 SIPRESIMDSNH-----IIYFLSMLPDSLIWYNVIRQCRSLLLDP--CNSCIKQ 372
SIP E+I SNH ++ FL LP+ +I Y + ++C DP C I Q
Sbjct: 775 SIP-ETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQ 827
>AL022162-2|CAI95696.1| 893|Homo sapiens oculocerebrorenal syndrome
of Lowe protein.
Length = 893
Score = 30.7 bits (66), Expect = 4.4
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +1
Query: 232 SIPRESIMDSNH-----IIYFLSMLPDSLIWYNVIRQCRSLLLDP--CNSCIKQ 372
SIP E+I SNH ++ FL LP+ +I Y + ++C DP C I Q
Sbjct: 767 SIP-ETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQ 819
>AL022162-1|CAI95695.1| 901|Homo sapiens oculocerebrorenal syndrome
of Lowe protein.
Length = 901
Score = 30.7 bits (66), Expect = 4.4
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +1
Query: 232 SIPRESIMDSNH-----IIYFLSMLPDSLIWYNVIRQCRSLLLDP--CNSCIKQ 372
SIP E+I SNH ++ FL LP+ +I Y + ++C DP C I Q
Sbjct: 775 SIP-ETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQ 827
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,944,214
Number of Sequences: 237096
Number of extensions: 1779031
Number of successful extensions: 3255
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3255
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6747805200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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