Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15d16r
(889 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|... 90 4e-19
SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch... 33 0.072
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S... 31 0.29
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 28 1.5
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 27 2.7
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 27 3.6
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar... 27 3.6
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 27 4.7
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 26 6.2
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 26 6.2
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy... 26 8.2
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 26 8.2
>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 271
Score = 89.8 bits (213), Expect = 4e-19
Identities = 42/124 (33%), Positives = 72/124 (58%)
Frame = -3
Query: 884 IINIKPTYYHCTIENHIKTHKEHYDAVVASEVIEHITDKQLFVNSCVAATKPGGRLFFTT 705
++N + Y H ++E +D V EV+EH+ + F+ S + KP GRL +T
Sbjct: 124 VLNGRLEYIHGSVEG--SQLPTTFDVVTCMEVLEHVEQPRDFLFSLMEKVKPNGRLVLST 181
Query: 704 PNKTRISQFLTIFVVENIIKIVKKGTHQYDKFITPNELTFLLERNNCLVESIYGLFYNPL 525
++T +++ LTI + E++++IV GTH ++KFI +EL+ L+ N ++ I G+ YNPL
Sbjct: 182 ISRTLLARLLTITLAEHVLRIVPVGTHTFEKFIRADELSNFLKEQNWIINDIRGVCYNPL 241
Query: 524 NNSW 513
W
Sbjct: 242 KQQW 245
>SPBC1347.09 |||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 284
Score = 32.7 bits (71), Expect = 0.072
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = -3
Query: 815 YDAVVASEVIEHITDKQLFVNSCVAATKPGGRLF 714
+DAVV S HI D Q N KP GRLF
Sbjct: 151 FDAVVCSMAYHHIKDLQEVTNKLSKLLKPNGRLF 184
>SPBC336.05c |||S-adenosylmethionine-
dependentmethyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 378
Score = 30.7 bits (66), Expect = 0.29
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = -3
Query: 830 THKEHYDAVVASEVIEH 780
TH +H DAVVASE IEH
Sbjct: 102 THYKHVDAVVASEFIEH 118
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 233 YQHPAYYWREAVMRFDLKGGAAVVTILETLELISQGG 343
++ P+ + E V+ L GG AVV + TLE I Q G
Sbjct: 87 FKKPSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSG 121
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -3
Query: 716 FFTTPNKTRISQFLTIFVVENIIKIVKKGTHQYDKFITPNELTFLLERNN 567
FF PN R F+ I V +++ I H Y+ P L L E N+
Sbjct: 360 FFANPNSQRFFPFIDIPPVRDMLVIPSSSPH-YNGSHNPKNLLLLSEDNS 408
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 27.1 bits (57), Expect = 3.6
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = -1
Query: 880 LTLNQHIITVLLRITLKHIKNTMMLLLHQR*LNT*PISSYL*IRALQQRNPEVD 719
+ L Q I VL+R+TLK I N LLL L + + + A Q +PE++
Sbjct: 1576 IQLLQIFILVLMRVTLKEISNKDKLLLQSIFLLSRKLQDSVQTGADQALSPEMN 1629
>SPAC23H3.03c |||nitrogen permease regulator
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 89 YYVCLFNVDVFSFHQITKVT 148
YY CL D+F FH I +T
Sbjct: 249 YYGCLIIADIFQFHNIYAMT 268
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +2
Query: 41 AIERISFLSILPQDITYYVCLFNVDVFSFHQITKVTK 151
++ R+ FLS+LP +I++ + F +D S Q +V+K
Sbjct: 103 SLVRLDFLSLLPVEISFRILSF-LDARSLCQAAQVSK 138
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 428 RLDGWTSSQRTWC*VVTGAHRHLQRK*STHL 336
R+D WT QR + V++G H + STHL
Sbjct: 246 RMDAWTLEQRVFYRVLSGMHSSI----STHL 272
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 608 ITPNELTFLLERNNCLVESIYGLFYNPLNNS 516
I+PNE F+L R+ L +YG + N+S
Sbjct: 620 ISPNERPFILSRSTFLGSGVYGAHWLGDNHS 650
>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 607
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 151 FSNFCDLVKRKNVHIKKTNIICYVLWQNR*KRNPF 47
F+N D+ K K VH K+ I V N+ KRN F
Sbjct: 540 FTNENDMSKYKEVHEKQAAIANMVNTFNKPKRNAF 574
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 541 KPYIDSTRQLFLSNRKVNSLGVMN 612
KP IDS ++ F++ K +SLG+++
Sbjct: 938 KPLIDSVKEFFVNYIKYDSLGLIS 961
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,528,476
Number of Sequences: 5004
Number of extensions: 71825
Number of successful extensions: 199
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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