Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15d16f
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|...    53   2e-08
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    29   0.61 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   1.9  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    27   2.5  
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    26   3.3  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    26   4.3  
SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.3  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    26   4.3  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   4.3  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    25   5.7  
SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom...    25   7.5  

>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 271

 Score = 53.2 bits (122), Expect = 2e-08
 Identities = 28/98 (28%), Positives = 47/98 (47%)
 Frame = +2

Query: 263 VINRIITYPKWRYYATANLYSKDENHGRTTLDSSEIKMFSKQMSEWWDVNGYLKSLHAMN 442
           ++N++     +         S+  NH   ++  +E+  F++    WWD +G  + LH MN
Sbjct: 3   ILNKVKNVKSYTRLVRQGFLSQQRNH---SVSVNEVDHFNELAKTWWDWDGGSRLLHLMN 59

Query: 443 KVRIPLIRDGLIQTSERTLTPLQDKKILDVGCGGGILA 556
             R+  + +       R       KKILD+GCGGGIL+
Sbjct: 60  STRLDFMTEVF-----RERNCFSGKKILDIGCGGGILS 92


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 28.7 bits (61), Expect = 0.61
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +2

Query: 446 VRIPLIRDGLIQTSERTLTPLQDKKILDVGCGGGILA 556
           VR    RD ++Q         +DK +LDVGCG GIL+
Sbjct: 37  VRTLSYRDAIMQNPHL----FRDKIVLDVGCGTGILS 69


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = +2

Query: 191  KIMFAKMSTKALNTWRLACYPASPVINRIITYPKWRYYATANLYSKD-----ENHGRTTL 355
            K M + MST +L + RLAC      I  ++ +  W YY  + L   D        GRT +
Sbjct: 4073 KFMSSMMSTVSLPSVRLACQLYGVSIQSLVFF-TWGYYIASVLNCPDIVFHTVLSGRTYI 4131

Query: 356  DSSEIKM 376
            + +E  M
Sbjct: 4132 EGAETVM 4138


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +2

Query: 401 WDVNGYLKSLHAMNKVRIPL-IRDGLIQTSERTLTP-LQDKKILDVGCGG 544
           W+   Y+  LH  NK++ P  + D   + S   L P  Q KK+++   GG
Sbjct: 45  WEDRHYIPDLHKSNKIKTPTSLADE--KKSHNELDPKAQIKKLMETRSGG 92


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +2

Query: 515 KKILDVGCGGGILA 556
           K +LDVGCG GIL+
Sbjct: 257 KTVLDVGCGTGILS 270


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 326 KDENHGRTT-LDSSEIKMFSKQMSEW 400
           K+EN    T LDS ++K F +  S+W
Sbjct: 100 KEENKDAVTRLDSQDVKRFEETYSQW 125


>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 516 LSCKGVKVLSDVCMRPSLING 454
           L C  +K+L D   RP++ NG
Sbjct: 128 LHCNDIKILQDCLRRPNISNG 148


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 407 VNGYLKSLHAMNKVRIPLIR--DGLIQTSERTLTPLQDKK 520
           VNGY +S+H   KVR    R   G+I    + L+   +KK
Sbjct: 125 VNGYARSMHNDRKVRASRSRRISGMILAHFKRLSGADEKK 164


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 441 FIACND-FR*PLTSHHSLICFENI-LISEESSVVR 343
           +I C + FR PL+ H  + CF+    ++EE  VV+
Sbjct: 464 YIYCTEPFRIPLSGHLDICCFDKTGTLTEEHMVVQ 498


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 473 LIQTSERTLTPLQDKKILDVGCGGGIL 553
           LI+  ++T +  ++   +DVGCG G+L
Sbjct: 263 LIELWKQTYSSNKEFSFVDVGCGNGLL 289


>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = +2

Query: 191 KIMFAKMSTKALNTWRLACYPASPVINRIITYPKWRYYATANLYSK 328
           K +  + + K + TWRL+ +P         T+ +   Y T  +  K
Sbjct: 259 KFLVLEENKKIVQTWRLSSWPTGHYAEITFTFDQADSYTTLRMIMK 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,873
Number of Sequences: 5004
Number of extensions: 45762
Number of successful extensions: 91
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)