Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15d14r
         (927 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    32   0.13 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   3.8  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   5.0  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   6.6  
SPCC1682.05c |||signal recognition particle subunit |Schizosacch...    26   8.7  

>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +3

Query: 453 MIFLCFSKNEDNYLKY--IHIYLEVLGIISIFLILATVPDLVIKVFLYFFLLNHLISAVN 626
           ++F+ FS      L Y  I IY   + ++   + +A++P +  K F +FF+L+H  S + 
Sbjct: 166 ILFMIFSAQSYKPLLYDKISIYGYFITVVLFLMTVASLPSVRRKFFEWFFVLHHTCSVLI 225

Query: 627 I 629
           I
Sbjct: 226 I 226


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 427 TFNTKGFTTQKFQPLQNG*-PNSNKSLIPFTTVT 329
           TF + GF T    P  +   P+SN S++P +T T
Sbjct: 650 TFTSSGFNTTSGLPTSSASTPSSNSSIVPTSTFT 683


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -1

Query: 528 FQAPLG-ICVYILSNYLHSSKNIKKSFSFTYCDILHLTQRVLRPKSFSHSKMANLILINR 352
           F  PL  + VY+LS Y+    N K    +T  D+L +T   LR  ++     A L + N 
Sbjct: 707 FHHPLHWLLVYLLSFYVERD-NYK--LLWTQLDLLAVTDHPLRVCAWLSQMRAKLWIRNG 763

Query: 351 *FLLPQSQTYRN 316
             L  Q+  YRN
Sbjct: 764 TTLRDQAHHYRN 775


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = -1

Query: 498  ILSNYLHSSKNIKKSFSFTYCDILHLTQRVLRPKSFSHSKMANLILINR*FLLPQSQTYR 319
            ILS  L  +K++ +S       ++      ++P+SF     A L LI+  +LLP+     
Sbjct: 1719 ILSE-LDDAKDVLESCFVDIYSVILECFLAIQPRSFPAFTFAWLSLISHSYLLPKVLLVN 1777

Query: 318  NDKM 307
            NDK+
Sbjct: 1778 NDKI 1781


>SPCC1682.05c |||signal recognition particle subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 429 LHLTQRVLRPKSFSHSKMANLILIN 355
           LH+TQR  +PKS    + A ++L N
Sbjct: 94  LHITQRGGKPKSSVDKRYAEILLFN 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,568,375
Number of Sequences: 5004
Number of extensions: 72969
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)