Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15d14f
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0417 + 17404433-17405392                                         30   1.6  
06_03_0481 - 21304802-21304920,21305063-21305131,21306140-21306557     28   6.5  
04_04_0704 + 27401683-27401818,27402761-27402937,27402983-274030...    27   8.7  

>09_04_0417 + 17404433-17405392
          Length = 319

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 420 WSDSDGERELAMMYRPDCSSDFVLMDERMIA 512
           W +S GE  +  + +PDC     LMD R++A
Sbjct: 285 WLESKGEEHVFFLNKPDCEESVALMD-RVVA 314


>06_03_0481 - 21304802-21304920,21305063-21305131,21306140-21306557
          Length = 201

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 485 EVRTAVRTVHHRKFTFSVTIAPH 417
           ++RTA RTVH   F+  +T+ PH
Sbjct: 161 KIRTAHRTVHRLAFSAPLTLFPH 183


>04_04_0704 +
           27401683-27401818,27402761-27402937,27402983-27403048,
           27403139-27403219,27404089-27404207
          Length = 192

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 586 PMWTLDDLDTLSCDIGGETAAREADAIIRSSIKTKSELQS 467
           P ++ DD+D+ SC I G++   E D  + S+  T  EL S
Sbjct: 150 PAFSDDDMDSRSCSISGDSDVDELDQHLLSA--TTIELHS 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,649,703
Number of Sequences: 37544
Number of extensions: 229827
Number of successful extensions: 494
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)