Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15d14f
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   4.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.0  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   7.0  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   7.0  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   7.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.3  

>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -3

Query: 275 DKNCSNNQNMSDNYSLPILSFTRNSRRLQ 189
           + + SNN N ++NY+    ++  N ++LQ
Sbjct: 85  NNSLSNNYNYNNNYNNYNNNYNTNYKKLQ 113


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 299 VSFAETLADKNCSNNQNMSDNYSLPILSFTRNSRRLQS 186
           + FA+T  D      +NM+  Y L  + + +N  R  S
Sbjct: 86  IFFAQTWKDNRLRLPENMTSEYRLLEVDWLKNMWRPDS 123


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = -3

Query: 320 LSNASKFVSFAETLADKNCSNNQNMSDNYSLPILSFTRNSRRLQSPEFLY 171
           LSN  K+ ++     + N + N N ++NY     ++  N  ++  P  +Y
Sbjct: 85  LSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIINIEQIPVPVPVY 134


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = -3

Query: 320 LSNASKFVSFAETLADKNCSNNQNMSDNYSLPILSFTRNSRRLQSPEFLY 171
           LSN  K+ ++     + N + N N ++NY     ++  N  ++  P  +Y
Sbjct: 85  LSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIINIEQIPVPVPVY 134


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 40  LHPCSHYRF 14
           +HPCS +RF
Sbjct: 81  IHPCSSFRF 89


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 40  LHPCSHYRF 14
           +HPCS +RF
Sbjct: 81  IHPCSSFRF 89


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 40  LHPCSHYRF 14
           +HPCS +RF
Sbjct: 81  IHPCSSFRF 89


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 25  VNKGAATVIFSSKININLTRQLQLK*LIIN 114
           VNK     I++S +N NLT    +  + IN
Sbjct: 522 VNKRNNAKIYTSSVNSNLTVNQTVNPVAIN 551


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,255
Number of Sequences: 438
Number of extensions: 2680
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)