Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15d13f
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.5  
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    26   3.2  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    26   3.2  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    25   5.7  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   5.7  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   7.5  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   7.5  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    25   9.9  

>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -2

Query: 550 STPIAASVVDEPDQKVAKELSDTGNSIDGSVV*TVGKTTPVHNNNVAVG 404
           STPI++S+        +  +S +  S  GS+     KT    +N+   G
Sbjct: 164 STPISSSITSSISSSASSSVSSSSASSSGSISSADAKTVSASSNSTISG 212


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 131 SKRIGLHLPHSDCCLQGSW 75
           S  +   LPHSD  L GSW
Sbjct: 290 SNSVSAKLPHSDSVLTGSW 308


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 227 WLFTXRNQNNHQVITNGNVNS--IRNSNYNGNLPLFVIVHGWNSNGNSAVNTMIRPALLA 400
           W+FT  ++N  QV  NG + S     +N   + PL    +G  S+G+     + +  LL 
Sbjct: 425 WVFTSDDRNLAQVWVNGRLVSGFEMKANLKNSTPL---TNGVTSSGHQVFKELTQAHLLP 481

Query: 401 VSDC 412
            + C
Sbjct: 482 RTQC 485


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 200 SRNGANNQYWLFTXRNQNNHQVITNGNVNSIRNSNY 307
           S+ G N +  +FT   +N   ++  G+++S   +NY
Sbjct: 38  SKKGTNEEVSVFTFDKKNLSTLLKRGSIDSNLKTNY 73


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 284 NSIRNSNYNGNLPLFVIVHGWNSNGN 361
           +SIRNS++N  L LF  V    S+GN
Sbjct: 604 SSIRNSDFNSQLYLFETVGVLISSGN 629


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +3

Query: 438 VLPTVYTTLPSMEFPVSDSSLATFWSGSSTTEAAIG 545
           VLPT   T  S    VS SSL++F    ST     G
Sbjct: 244 VLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTG 279


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 247  PKQPSSYYKWQCQLYPELELQWKPASLCYCPRL 345
            PK P  +Y+W  + +PE    W  +   YC  L
Sbjct: 2185 PKFPPVFYEWFVESFPEPN-NWVTSRQNYCRTL 2216


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 248 QNNHQVITNGNVNSIRNSN 304
           QNNHQV   GN+    N N
Sbjct: 120 QNNHQVFLIGNIEFHSNEN 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,405,349
Number of Sequences: 5004
Number of extensions: 49803
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)