Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15d13f
         (554 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          29   0.032
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    28   0.073
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    26   0.22 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   0.51 
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    24   1.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    24   1.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.6  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   2.1  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   2.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   4.8  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   6.3  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   6.3  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   6.3  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   6.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   8.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   8.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.4  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    21   8.4  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 29.1 bits (62), Expect = 0.032
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 230 LFTXRNQNNHQVITNGNVNSIRNSNYNGNLPLFVIVHGWNSNGN 361
           L T +  +N+  IT GN N+  ++N N N       +G N NGN
Sbjct: 216 LETCQRNSNNSTITAGNANTNASNNNNNNNNNNNNNNGANDNGN 259



 Score = 27.5 bits (58), Expect = 0.096
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 245 NQNNHQVITNGNVNSIRNSNYNGNL 319
           N NN+    NGN N   N+N NG++
Sbjct: 248 NNNNNGANDNGNGNGASNNNNNGDM 272



 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 236 TXRNQNNHQVITNGNVNSIRNSNYNGN 316
           T  + NN+    N N N+  N N NGN
Sbjct: 235 TNASNNNNNNNNNNNNNNGANDNGNGN 261


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 27.9 bits (59), Expect = 0.073
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 489 PTLGTPLTAVLYRPLARPRQST 424
           P +GTP T ++Y+P   P Q++
Sbjct: 847 PVIGTPSTGMMYKPFLIPEQTS 868


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 236 TXRNQNNHQVITNGNVNSIRNSNYNGN 316
           T  N NN++   N N N+  N+NYN N
Sbjct: 322 TIHNNNNYKY--NYNNNNYNNNNYNNN 346


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +2

Query: 236 TXRNQNNHQVIT-NGNVNSIRNSNYNGNLPLF 328
           T  N NN+     N N N+  N+NYN    L+
Sbjct: 322 TIHNNNNYNNNNYNNNYNNYNNNNYNNYKKLY 353


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 251 NNHQVITNGNVNSIRNSNYNGN 316
           NN++     N N+  N+NYN N
Sbjct: 87  NNYKYSNYNNYNNNYNNNYNNN 108



 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 245 NQNNHQVITNGNVNSIRNSNYNGN 316
           N NN+    N N N+  N+NYN N
Sbjct: 93  NYNNY----NNNYNNNYNNNYNNN 112


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 251 NNHQVITNGNVNSIRNSNYNGN 316
           NN++     N N+  N+NYN N
Sbjct: 87  NNYKYSNYNNYNNNYNNNYNNN 108



 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 245 NQNNHQVITNGNVNSIRNSNYNGN 316
           N NN+    N N N+  N+NYN N
Sbjct: 93  NYNNY----NNNYNNNYNNNYNNN 112


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 439  TTPVHNNNVAVGDGQQGGAD 380
            + P +N +   GDG++GGA+
Sbjct: 1052 SNPSYNFSSVSGDGEEGGAE 1071


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 439  TTPVHNNNVAVGDGQQGGAD 380
            + P +N +   GDG++GGA+
Sbjct: 1048 SNPSYNFSSVSGDGEEGGAE 1067


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 251 NNHQVITNGNVNSIRNSNYN 310
           NN++     N N+  N+NYN
Sbjct: 320 NNYKYSNYNNYNNYNNNNYN 339


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +2

Query: 245 NQN-NHQVITNGNVNSIRNSNYNGN 316
           NQN N+Q     N N+ +N+N N N
Sbjct: 428 NQNDNNQKNNKKNANNQKNNNQNDN 452


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
          protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 37 GWLNSIVFWQCYP 75
          GW  + +F+Q YP
Sbjct: 23 GWWKNAIFYQVYP 35


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 278 NVNSIRNSNYNGN 316
           N N+  N+NYN N
Sbjct: 93  NYNNYNNNNYNNN 105


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 278 NVNSIRNSNYNGN 316
           N N+  N+NYN N
Sbjct: 93  NYNNYNNNNYNNN 105


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 278 NVNSIRNSNYNGN 316
           N N+  N+NYN N
Sbjct: 93  NYNNYNNNNYNNN 105


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 278 NVNSIRNSNYNGN 316
           N N+  N+NYN N
Sbjct: 93  NYNNYNNNNYNNN 105


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 245 NQNNHQVITNGNVNSIRNSNYNGN 316
           NQNN+Q     + +S  N+ +N N
Sbjct: 440 NQNNNQHNDQAHHSSKSNNRHNNN 463


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 126 FGCLMARVFLTSLT 167
           FGCL  R+F   LT
Sbjct: 275 FGCLSTRLFYYQLT 288


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +2

Query: 236 TXRNQNNHQVITNGNVNSIRNSNYNGNLPLFVIVHGWNSNGNS 364
           T R ++    I +   N+ + SNYN     +   + +N+N N+
Sbjct: 304 TERERSKEPKIISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNN 346


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 343 LEQQRKLRCEHHD 381
           L + R +RC HHD
Sbjct: 142 LTKSRLMRCLHHD 154


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 123 TFGCLMARVFLTSLTWXNRPRKTSL 197
           T   +M + F  S  W N  R TSL
Sbjct: 15  TITIVMCQTFTYSHGWTNGKRSTSL 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,961
Number of Sequences: 438
Number of extensions: 4434
Number of successful extensions: 34
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)