Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15d12r
(879 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 31 0.29
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 31 0.29
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 30 0.50
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe... 29 1.2
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 28 2.0
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 27 4.7
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 26 6.1
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 26 6.1
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr... 26 8.1
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 26 8.1
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 26 8.1
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 26 8.1
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 30.7 bits (66), Expect = 0.29
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 453 LVAWSTLFLSHWKALRVFISLDVIAEVRA 539
L W LFL+HWK V I L ++ +V A
Sbjct: 239 LYMWGVLFLNHWKLTVVIIVLKLVQDVVA 267
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 30.7 bits (66), Expect = 0.29
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -3
Query: 361 ANQNTLGATYSTALRAIETTRSNLVWSQQRISEFTNYFESGYVED 227
+N TL + YS AL +ETT+ ++ S+ TNY Y ED
Sbjct: 338 SNLITLQSRYSQALSELETTKRAFAALRKEKSKKTNYSVGAYNED 382
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 29.9 bits (64), Expect = 0.50
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = -3
Query: 577 SGNDDIRPQDYNAALTSAITSNEINTLRAFQWLRNNVDQATRTLGSVSTILN 422
SG +D R +Y+A L S NEINT++ Q N++ T T +V I++
Sbjct: 636 SGYEDGR-LEYSADLASKSNRNEINTMQDVQ--ENSISHVTATQPAVKNIVD 684
>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 405
Score = 28.7 bits (61), Expect = 1.2
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = -3
Query: 748 RPWVYCAGLRHGTAEDFNFFWNRYLQEDLSSEKVVMLNVAGCTTDQASLNRFLDAIVS 575
R W Y GL G D N +N YLQ K LNV + + ++LD+I S
Sbjct: 307 RVWTYETGLLAGEELDENLPYNDYLQYYGPDYK---LNVLSNNMENHNTRQYLDSITS 361
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 27.9 bits (59), Expect = 2.0
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
Frame = -3
Query: 553 QDYNAA--LTSAITSNEINTLRAFQWL-RNNVDQATR--TLGSVSTILNTIIGRLLNEEQ 389
Q +NA L + + I+ +WL + +V +R T V+T N + RL
Sbjct: 614 QPFNAVMWLDKMLNYSIISITSIIEWLIKQDVTIWSRSYTWSLVNTTFNKLAARLRRSVS 673
Query: 388 INEVSNWLT-ANQNTLGAT--YSTALRAIETTRSNLVWSQQRISEFTNYFESGYV---ED 227
E S+ + AN+ T +ALRA+ + + +W ++ Y ES ++ +D
Sbjct: 674 NKEDSSLINEANEEKEIVTNLLLSALRALISENAENIWVSHWLNLMLKYVESNFLSVKKD 733
Query: 226 VIEE 215
IEE
Sbjct: 734 TIEE 737
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 882
Score = 26.6 bits (56), Expect = 4.7
Identities = 30/175 (17%), Positives = 80/175 (45%), Gaps = 5/175 (2%)
Frame = -3
Query: 754 NMRPWVYCAGLRHGTAEDFNFFWNRYLQEDLSSEKVVMLNVAGCTTDQASLNRFLDAIVS 575
N+R V+ +R+G A+ ++ Y + + + L G T D+ + + LD +
Sbjct: 709 NLRSAVFNIAIRYGGAKSWDQLLEIYTKTNDPYVRNSCLRAFGVTEDEKYIQKTLDLTL- 767
Query: 574 GNDDIRPQDYNAALTSAITSNEINTLRAFQWLRNNVDQATRTLGSVST----ILNTIIGR 407
+ ++ QD L + +++++ L +++ +N D+ L T ++ +
Sbjct: 768 -DPIVKEQDIYLILVT-LSTHKNGVLAMWKFATSNWDKLLSRLPVAGTMRGYVVRFVTSG 825
Query: 406 LLNEEQINEVSNWLTANQNTLGATYSTAL-RAIETTRSNLVWSQQRISEFTNYFE 245
+ I+++ + A+++T Y AL ++++T +N + + + + T + +
Sbjct: 826 FTHASAIDKIKEFF-ADKDT--KLYERALQQSLDTISANSSFIDKSLDDITRWLK 877
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 313 IETTRSNLVWSQQRISEFTNYFESGYVEDVI 221
IE + N+ W Q+RISEF F+ Y D++
Sbjct: 713 IENGKVNINWPQKRISEF---FQKNYDWDLL 740
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/57 (21%), Positives = 26/57 (45%)
Frame = -3
Query: 862 QRMYVMEFLCNVGHEECNNFGTQAFRRWSTGTFIPANMRPWVYCAGLRHGTAEDFNF 692
QRM++ + L +G + +++ F+ + W++C G+R G F +
Sbjct: 897 QRMFITDLLNVIGRKIWKKLAE--ILGYTSRRFLSSAEVKWLFCLGMRDGLKPSFKY 951
>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 311
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 335 CGSQGVLVGRQPVRNLIYLFLV 400
C S LVG QP++NL +L +V
Sbjct: 61 CFSPTSLVGAQPLKNLTHLIIV 82
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 351 FWLAVNQFETSFICSSLRRRPIIVFKIVETLPRVLVAWST 470
F ++N+ ++ C R PI + K+++ P +L WST
Sbjct: 2109 FITSLNKNQSRIFCF---REPIRISKLLQNFPALLSKWST 2145
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = -3
Query: 490 FQWLRNNVDQATRTLGSVSTILNTIIGRLLNEEQINEVSNWLTANQNTLGATYSTA 323
F+ LR A G ST+ T L +E+ VS +LT + YSTA
Sbjct: 318 FEGLRFQGSSAVLKEGLNSTVKKTFFDNLNSEKVCPSVSPFLTPDNIASSILYSTA 373
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/74 (20%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = -3
Query: 832 NVGHEECNNFGTQAFRRWSTGTFIPANMRPWVYCAGLRHGTAEDFNFFWNR-YLQEDLSS 656
+ H + +++G + +RR+ F+ + + Y +G+ + + +F+W ++ E +
Sbjct: 932 SANHMQQSDYGFK-YRRFLPHMFLEGDFNEYGYDSGVENRFLQKSDFYWEAGFISETYPA 990
Query: 655 EKVVMLNVAGCTTD 614
+ LNV G D
Sbjct: 991 --AIQLNVWGMNPD 1002
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,465,009
Number of Sequences: 5004
Number of extensions: 72477
Number of successful extensions: 213
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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