Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15d12f
(603 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 55 9e-09
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 30 0.30
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||... 26 3.7
SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc... 26 4.9
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa... 26 4.9
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual 25 6.4
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 25 8.5
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 25 8.5
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc... 25 8.5
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 54.8 bits (126), Expect = 9e-09
Identities = 39/147 (26%), Positives = 73/147 (49%), Gaps = 1/147 (0%)
Frame = +2
Query: 164 LPTTTRPRHYQVTLTPYFDVVPANVNPFTFDGEVTIYTSPTVANVNEVVIHCNDLTIQSL 343
LP +P HY ++L P ++ FT+ G+V + T + + N + +H +L I +
Sbjct: 20 LPKNVKPIHYDLSLYP-------DLETFTYGGKVVV-TLDVLEDSNSITLHGINLRILTA 71
Query: 344 SIGYQSGTNVVDITATGQTFACEMPFSFLRIRTTEALVLNREYIIKSTFRGNLQTNMRGF 523
++ + S T + A+ ++ E + ++ + N ++ F + + M GF
Sbjct: 72 ALEWGSQT----VWASEVSYGDER----IVLQFPSTVPANSVAVLTLPFTARISSGMEGF 123
Query: 524 YRSWYVDSTGR-RWMGTTQFQPGHARQ 601
YRS YVDS G +++ TTQ +P AR+
Sbjct: 124 YRSSYVDSDGNTKYLATTQMEPTSARR 150
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 29.9 bits (64), Expect = 0.30
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 275 TSPTVANVNEVVIHCNDLTIQSLSIGYQSGTNVVDITATGQTFACEMPF 421
+S +AN V H N+ T+QS + +Q+G N V+ + ++F +PF
Sbjct: 397 SSHFIANYGGSVHHSNENTMQS-DLQHQNGNNAVNHHHSSRSFGGNVPF 444
>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 295
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Frame = -2
Query: 143 ASSQIQPTHLLVLV--WGLTLVK------FVRRLRPRGSKTSEMP 33
A+ I+P HLL L+ W ++ +R LRP GSK +P
Sbjct: 178 ANDYIKPNHLLFLIVGWAFAVLSNFRTHIILRDLRPAGSKKRVIP 222
>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
S14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +2
Query: 233 NVNPFTFDGEVTIYTSPTVANVNEVVIHCNDLTIQSLSIGYQSGTNV 373
NV P GE+ + A+ N+ +H DLT + + G V
Sbjct: 4 NVGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKV 50
>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
S14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +2
Query: 233 NVNPFTFDGEVTIYTSPTVANVNEVVIHCNDLTIQSLSIGYQSGTNV 373
NV P GE+ + A+ N+ +H DLT + + G V
Sbjct: 4 NVGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKV 50
>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 277 FSHSSKR*RSCYPLQRLDHSKPLNWLPKWN 366
F+H S+R + L R SK LN LPK N
Sbjct: 409 FTHWSRRLLTFQRLPRAHDSKSLNLLPKIN 438
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.0 bits (52), Expect = 8.5
Identities = 21/73 (28%), Positives = 29/73 (39%)
Frame = +1
Query: 142 ASGSGVSSSNDHTPETLSSNTDSIFRCCTSQREPLHF*RRSYYLHFSHSSKR*RSCYPLQ 321
A+ S N TP T S+T S +S PL + F + P
Sbjct: 344 ANYSNTPPRNTVTPSTARSSTLSQNPSSSSNSIPLISRNLRDFSFFKRCLEE--DIEPTL 401
Query: 322 RLDHSKPLNWLPK 360
RLDH+ L+WL +
Sbjct: 402 RLDHASGLSWLTR 414
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 139 DASGSGVSSSNDHTPETLSSNTDS 210
DA SG SSS+ H+P +S++ S
Sbjct: 228 DAERSGRSSSSSHSPSPSASSSSS 251
>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 479
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 236 VNPFTFDGEVTIYTSPTVANVNEVVIHCNDLTIQS 340
+N D ++TI P +N NE V+ C + ++QS
Sbjct: 425 MNEAVCDQKITIRL-PINSNTNEAVVECENKSMQS 458
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,601,702
Number of Sequences: 5004
Number of extensions: 55157
Number of successful extensions: 183
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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