Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15d10r
(901 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 372 e-104
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 189 5e-49
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 176 4e-45
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 121 2e-28
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 99 7e-22
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 95 1e-20
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 91 1e-19
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 69 7e-13
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 2e-05
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 31 0.29
SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr... 31 0.29
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 29 1.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 1.2
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 28 1.6
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 28 2.1
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 28 2.1
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 2.1
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 27 3.6
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 3.6
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 27 4.8
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 8.4
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 26 8.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 372 bits (914), Expect = e-104
Identities = 175/196 (89%), Positives = 184/196 (93%)
Frame = -2
Query: 801 LAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKS 622
LAGRDLTDYLMKIL ERGY+F+TTAEREIVRDIKEKLCYVALDFEQE+ TAA SSSLEKS
Sbjct: 180 LAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKS 239
Query: 621 YELPDGQVITIGNERFRCPEALFQPSFLGMEANGIHETTYNSIMKCDVDIRKDLYANTVL 442
YELPDGQVITIGNERFR PEALFQPS LG+E GIHE TYNSIMKCDVDIRKDLY N V+
Sbjct: 240 YELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVM 299
Query: 441 SGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 262
SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISK
Sbjct: 300 SGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISK 359
Query: 261 QEYDESGPSIVHRKCF 214
QEYDESGP IV+RKCF
Sbjct: 360 QEYDESGPGIVYRKCF 375
Score = 68.5 bits (160), Expect = 1e-12
Identities = 30/33 (90%), Positives = 32/33 (96%)
Frame = -1
Query: 901 RTTXIVLDSGDGVSHTVPIYEGYALPHAILRLD 803
RTT IVLDSGDGV+HTVPIYEGYALPHAI+RLD
Sbjct: 147 RTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLD 179
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 189 bits (460), Expect = 5e-49
Identities = 87/196 (44%), Positives = 130/196 (66%)
Frame = -2
Query: 801 LAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKS 622
+ GRD+TDYL L + G+ ++AE+EIVR+IKEK CYVA DF E+ + +
Sbjct: 185 IGGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHT 244
Query: 621 YELPDGQVITIGNERFRCPEALFQPSFLGMEANGIHETTYNSIMKCDVDIRKDLYANTVL 442
Y+LPD Q IT+G E F PE LF P +G EA+G+H + SI+ D+D+R LY+N VL
Sbjct: 245 YQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVL 304
Query: 441 SGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 262
SGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+
Sbjct: 305 SGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITS 364
Query: 261 QEYDESGPSIVHRKCF 214
+EY ++ +++ R+ F
Sbjct: 365 EEY-KNDQNVIFRRRF 379
Score = 48.4 bits (110), Expect = 1e-06
Identities = 19/35 (54%), Positives = 29/35 (82%)
Frame = -1
Query: 901 RTTXIVLDSGDGVSHTVPIYEGYALPHAILRLDFG 797
RTT IVL+ GDG++H+VPIY+G+++P AI + + G
Sbjct: 152 RTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIG 186
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 176 bits (428), Expect = 4e-45
Identities = 88/199 (44%), Positives = 131/199 (65%), Gaps = 12/199 (6%)
Frame = -2
Query: 801 LAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKS 622
+AGRD T YL+ +L +GY+F TA+ E VR++KEKLCYV+ D E + + ++ L ++
Sbjct: 180 VAGRDATRYLISLLLRKGYAFNRTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRN 239
Query: 621 YELPDGQVITIGNERFRCPEALFQPSFLGMEANGIHETTYNSIMKCDVDIRKDLYANTVL 442
Y LPDG+VI +G+ER+ CPE LFQP +G E G+ E +++I DVDIRK LY VL
Sbjct: 240 YTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVL 299
Query: 441 SGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSILAS 295
SGG++MY G+ R++KEI L P+ + K+KI P R+++V+IGG++LA
Sbjct: 300 SGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLAD 359
Query: 294 -LSTFQQMWISKQEYDESG 241
++ MW+SK E++E G
Sbjct: 360 IMAQNDHMWVSKAEWEEYG 378
Score = 43.2 bits (97), Expect = 5e-05
Identities = 17/32 (53%), Positives = 24/32 (75%)
Frame = -1
Query: 898 TTXIVLDSGDGVSHTVPIYEGYALPHAILRLD 803
++ +V+DSGDGV+H VP+YE L H + RLD
Sbjct: 148 SSGVVVDSGDGVTHIVPVYESVVLNHLVGRLD 179
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 121 bits (291), Expect = 2e-28
Identities = 70/179 (39%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Frame = -2
Query: 744 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 565
S+ +R ++ + KE + V LD + A A+S + K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV-LDTPFDEAKASSRNP--KPFEFPDGVTHKFGQERFRIS 299
Query: 564 EALFQPSFLGMEAN---------GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGI 412
E LF PSF + G+HE Y SI+ CD ++R L N V++GGT++ PG+
Sbjct: 300 EILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGL 359
Query: 411 ADRMQKEITALAP-STMKIKII-APPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 241
++R+Q E+ LA S + + +VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 360 SERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 99.1 bits (236), Expect = 7e-22
Identities = 67/214 (31%), Positives = 104/214 (48%), Gaps = 20/214 (9%)
Frame = -2
Query: 801 LAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASS--SSLE 628
+ G+ LT+YL ++++ R Y+ E IV +IKE +CYV+ +F+++M S LE
Sbjct: 188 VGGKLLTNYLKEVISYRKYNMME--ETYIVNEIKESVCYVSQNFKEDMEICHEKPRSKLE 245
Query: 627 KSYELPD------------------GQVITIGNERFRCPEALFQPSFLGMEANGIHETTY 502
Y LPD QV+ + NERF PE LF PS + + GI E
Sbjct: 246 ICYALPDYSTGKHGYIVRDINQKIEQQVLNLSNERFMIPELLFSPSDIEIREAGIPEAVM 305
Query: 501 NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV 322
S+ +I+ L N V GG +PG R+ E+ +LAP+ ++K+ P +
Sbjct: 306 QSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFP 365
Query: 321 WIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 220
W S + L + I++ EY E G +I+ RK
Sbjct: 366 WKKASHM-PLEHWNANKITRSEYSEHGANIMTRK 398
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 889 IVLDSGDGVSHTVPIYEGYALPHAILRLDFG 797
+V+DSG +H +P+ + A+ R+D G
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVG 189
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 95.1 bits (226), Expect = 1e-20
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Frame = -2
Query: 522 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 343
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 342 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 217
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 91.5 bits (217), Expect = 1e-19
Identities = 66/214 (30%), Positives = 101/214 (47%), Gaps = 21/214 (9%)
Frame = -2
Query: 801 LAGRDLTDYLMKILTERGY--SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSS-- 634
LAGRD+T ++ +L +R S TAER IKE+ CYV D +E +
Sbjct: 211 LAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IKEECCYVCPDIVKEFSRFDREPDRY 265
Query: 633 LEKSYELPDGQVITI--GNERFRCPEALFQPSFLGME-ANGIHETTYNSIMKCDVDIRKD 463
L+ + E G TI G ERF PE F P + + E N + +D+RK
Sbjct: 266 LKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKG 325
Query: 462 LYANTVLSGGTTMYPGIADRMQKEITALAPST--------------MKIKIIAPPERKYS 325
LY N VLSGG+T++ +R+Q+++ + + + +I+ ++ +
Sbjct: 326 LYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNA 385
Query: 324 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 223
VW GGS+LA F +K +Y+E G SI R
Sbjct: 386 VWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
Score = 36.7 bits (81), Expect = 0.004
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = -1
Query: 895 TXIVLDSGDGVSHTVPIYEGYALPHAI 815
T V+DSGDGV+H +P+ EGY + +I
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVIGSSI 206
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 69.3 bits (162), Expect = 7e-13
Identities = 31/118 (26%), Positives = 62/118 (52%)
Frame = -2
Query: 582 ERFRCPEALFQPSFLGMEANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 403
E+ R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 402 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 229
+++E+T++ P I + W G S + F+ ++++EY E GP +
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 898 TTXIVLDSGDGVSHTVPIYEGYALPHAILRLDFGRSR 788
++ IVL+ G+ SH +P+ G + R+ +G S+
Sbjct: 165 SSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQ 201
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -2
Query: 468 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 298
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 297 SLSTFQQMWISKQEYDESGPSIVHRK 220
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 30.7 bits (66), Expect = 0.29
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = -3
Query: 716 SFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNP 546
+F +R S A + SS R P +P+AP+R PTV++S S A+ ++ P
Sbjct: 335 AFTANRFSPAAPTTVSSERNAPPYPSAPTRPTP--PTVQTSSSAAPVDSAEPVAYQP 389
>SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 30.7 bits (66), Expect = 0.29
Identities = 21/86 (24%), Positives = 38/86 (44%)
Frame = -2
Query: 726 EREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQP 547
E +I + K ++ D Q+ T+ SSL SYE + + ++ P + F+P
Sbjct: 81 ELDIAKSDSYKYTFIIKDCHQDWETSDEKSSL--SYEYDFTPIYSKEDQVVSIPFSEFKP 138
Query: 546 SFLGMEANGIHETTYNSIMKCDVDIR 469
++ G G E + I + + IR
Sbjct: 139 TYRGRPVEGAPELDVSKITQFSIMIR 164
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = -2
Query: 861 PTPYPSTRDTHSLTPSCVWTLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYV 682
PTP+ R L+PS + + + DY K+ R Y T ERE + KE Y+
Sbjct: 698 PTPFSPFRSFQELSPSEQAAMVQKRIADYSRKVY-HRLYD-NTVIERETIICQKENSFYI 755
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 1.2
Identities = 20/79 (25%), Positives = 40/79 (50%)
Frame = -3
Query: 707 TSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWK 528
+S S ++SLS+SS ++ S +++ + SSP+ T +++ SS+
Sbjct: 245 SSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTS 304
Query: 527 PTASTRPHTTPS*SATWTS 471
T S+ ++ S S+T +S
Sbjct: 305 STISSSSSSSSSFSSTLSS 323
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -3
Query: 656 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWKPTASTRPHTTPS 492
PP+ +PS SL P S + + S R ++ +S + KP+ P T S
Sbjct: 217 PPIEEYSPSVSLPTSPVAEESYNNVQRSSTVRNNTTQKSVLKKPSRKMSPAYTSS 271
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -3
Query: 680 LSTSSRRWPPL--HPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWV 534
LS + WP L HP P R P++ + P +T S + S +P S+V
Sbjct: 107 LSDLQKHWPSLKPHPLPPKRVSLGIPSISNPPVDTVISDSP-TSPHPPSFV 156
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.9 bits (59), Expect = 2.1
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = -3
Query: 707 TSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPRSW 537
TS ATS S S P P +PS S T+ +SPS + S + +S +P S
Sbjct: 1602 TSPSYSATSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1660
Query: 536 VWKPTASTRPHTTPS*SAT 480
+ PT+ + T+PS S T
Sbjct: 1661 SYSPTSPSYSPTSPSYSPT 1679
Score = 26.6 bits (56), Expect = 4.8
Identities = 23/79 (29%), Positives = 38/79 (48%)
Frame = -3
Query: 716 SFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSW 537
+++ S S + + + S P P +PS S T+ +SPS + S S +P S
Sbjct: 1570 AYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSP----SYSPTSP 1625
Query: 536 VWKPTASTRPHTTPS*SAT 480
+ PT+ + T+PS S T
Sbjct: 1626 SYSPTSPSYSPTSPSYSPT 1644
Score = 26.6 bits (56), Expect = 4.8
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 656 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPRSWVWKPTASTRPHTTPS*S 486
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1597 PSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1656
Query: 485 AT 480
T
Sbjct: 1657 PT 1658
Score = 26.2 bits (55), Expect = 6.3
Identities = 26/76 (34%), Positives = 36/76 (47%)
Frame = -3
Query: 707 TSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWK 528
TS TS S S+ P P +PS S T+ +SPS + S S +P S +
Sbjct: 1595 TSPSYSPTSPSYSATS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYSPTSPSYS 1649
Query: 527 PTASTRPHTTPS*SAT 480
PT+ + T+PS S T
Sbjct: 1650 PTSPSYSPTSPSYSPT 1665
Score = 25.8 bits (54), Expect = 8.4
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 656 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPRSWVWKPTASTRPHTTPS*S 486
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1625 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1684
Query: 485 AT 480
T
Sbjct: 1685 PT 1686
Score = 25.8 bits (54), Expect = 8.4
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 656 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPRSWVWKPTASTRPHTTPS*S 486
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1632 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1691
Query: 485 AT 480
T
Sbjct: 1692 PT 1693
Score = 25.8 bits (54), Expect = 8.4
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 656 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPRSWVWKPTASTRPHTTPS*S 486
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1639 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1698
Query: 485 AT 480
T
Sbjct: 1699 PT 1700
Score = 25.8 bits (54), Expect = 8.4
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 656 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPRSWVWKPTASTRPHTTPS*S 486
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1646 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1705
Query: 485 AT 480
T
Sbjct: 1706 PT 1707
Score = 25.8 bits (54), Expect = 8.4
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 656 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPRSWVWKPTASTRPHTTPS*S 486
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1653 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1712
Query: 485 AT 480
T
Sbjct: 1713 PT 1714
Score = 25.8 bits (54), Expect = 8.4
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 656 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPRSWVWKPTASTRPHTTPS*S 486
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1660 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1719
Query: 485 AT 480
T
Sbjct: 1720 PT 1721
Score = 25.8 bits (54), Expect = 8.4
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 656 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPRSWVWKPTASTRPHTTPS*S 486
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1667 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1726
Query: 485 AT 480
T
Sbjct: 1727 PT 1728
Score = 25.8 bits (54), Expect = 8.4
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 656 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPRSWVWKPTASTRPHTTPS*S 486
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1674 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1733
Query: 485 AT 480
T
Sbjct: 1734 PT 1735
Score = 25.8 bits (54), Expect = 8.4
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 656 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPRSWVWKPTASTRPHTTPS*S 486
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1740
Query: 485 AT 480
T
Sbjct: 1741 PT 1742
Score = 25.8 bits (54), Expect = 8.4
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 656 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPRSWVWKPTASTRPHTTPS*S 486
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1688 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1747
Query: 485 AT 480
T
Sbjct: 1748 PT 1749
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -2
Query: 321 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 220
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 27.1 bits (57), Expect = 3.6
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -3
Query: 695 SCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRS 540
S ++ TS R PP + + SL N P RSS E D V + P++
Sbjct: 40 SPVSTARTSIARRPPSTVGSQTGSLVNAPPKRSSGIERFDHVTGTAENRPQT 91
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 27.1 bits (57), Expect = 3.6
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = -3
Query: 656 PPLHPAA-PSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWKPTASTRPH 504
PP HPA+ SR + ++ TV+SSPS T ++L + P++ T S+ P+
Sbjct: 75 PPQHPASINSRRVASY-TVQSSPSRT---TYRQLPNEPQNSAAYTTYSSFPN 122
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 26.6 bits (56), Expect = 4.8
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 4/121 (3%)
Frame = -2
Query: 675 DFEQEMATAASSSSLEKSY--ELPDGQ-VITIGNERFRCPEALFQPSFLG-MEANGIHET 508
D E++ SS+ + +Y + + Q ++T+ NE + E L S + E+
Sbjct: 108 DDHPEISGHVSSNDKDFAYFEDKSENQPLVTLPNENNQVIEPLSSQSCKSQLSTQNYSES 167
Query: 507 TYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKY 328
+ CD+D ++ + + T ++P AD I ++K A RKY
Sbjct: 168 DFGWNQLCDLD---PIFKSLAFTDDTNLFPAFADSEAALIMLKKREMTRVKHRAGRPRKY 224
Query: 327 S 325
S
Sbjct: 225 S 225
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 396 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 286
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -3
Query: 647 HPAAPSRSLTNFPTVRSSPSETKDSV--AQRLSSNPR 543
HPA+ SLTN ++ + P+ D + S +PR
Sbjct: 131 HPASVENSLTNVNSIHAQPTTISDMIDLTDETSYDPR 167
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,818,273
Number of Sequences: 5004
Number of extensions: 82214
Number of successful extensions: 369
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -