Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15d08r
         (859 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0292 - 29023935-29024102,29024974-29025048,29025147-290252...    30   2.7  
12_02_0269 - 16617292-16618852,16622763-16623562                       29   6.3  
01_05_0719 + 24580765-24581090,24581285-24581401,24582739-245828...    28   8.3  

>05_07_0292 -
           29023935-29024102,29024974-29025048,29025147-29025238,
           29025257-29025319,29025418-29025504,29025625-29025783,
           29025876-29025974,29026048-29026175,29027766-29028433
          Length = 512

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -2

Query: 234 KRLSTEKFYFILQFKIINNSLSLFGVF 154
           KR S E FY I   KI +  +SLFG+F
Sbjct: 238 KRASMEDFYDIKSSKIDDKQISLFGIF 264


>12_02_0269 - 16617292-16618852,16622763-16623562
          Length = 786

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -3

Query: 383 NSQEDSKTSFMFDS*YRQTNELNACNIFTLNFNIQLRNRKLP 258
           N ++D      F +      EL +CN+  L+FN+ L   + P
Sbjct: 712 NDEDDQTDMVKFAALATSLRELGSCNVRCLDFNVALMEHRQP 753


>01_05_0719 +
           24580765-24581090,24581285-24581401,24582739-24582866,
           24582938-24583036,24583126-24583284,24584113-24584199,
           24584324-24584415,24584570-24584644,24585257-24585424
          Length = 416

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 234 KRLSTEKFYFILQFKIINNSLSLFGVF 154
           +R + E FY I   K+ +N ++LFG+F
Sbjct: 163 RRANMEDFYDIKSSKVDDNQINLFGIF 189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,808,070
Number of Sequences: 37544
Number of extensions: 287301
Number of successful extensions: 384
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)