Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15d08f
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    27   1.6  
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    26   3.7  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   6.5  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    25   8.7  

>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 22/79 (27%), Positives = 38/79 (48%)
 Frame = -2

Query: 328 TIALFYVVPSLNSIWLIVFLCLLQYRLTLHPALHHSVYLLAFASQILLCCV*HLAFPLIP 149
           ++++  + PSL+SI   + L L      +H  L     L  +AS I      +L+F L  
Sbjct: 703 SMSVLPISPSLHSILRFLLLLLAFLCFAMHILLTPEATLRKWASSI------YLSFRL-- 754

Query: 148 SNECLLLSMVVRTTPKYLW 92
             EC+ +S ++ + P Y W
Sbjct: 755 --ECVFISFLIFSVPIYDW 771


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +1

Query: 163 KQDAIHNTIKFERQKLEDIQN 225
           K+DA+++TI+ E QK  +IQN
Sbjct: 66  KEDALYSTIREEYQKAINIQN 86


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 22  IDRNTMENTEKADLNDAKTCNLLAKGILEL 111
           + ++  +N  K D +D+K+ NLL+   LEL
Sbjct: 516 VHKSLRQNCAKLDFDDSKSKNLLSVECLEL 545


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 358 PFLHWL-P*PVTIALFYVVPSLNSIWLIVFLCLL 260
           PF  WL     TIA +Y+V S   I + +FL L+
Sbjct: 404 PFSFWLFSIFCTIAAYYLVSSSTKITVFIFLYLM 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,464,251
Number of Sequences: 5004
Number of extensions: 48349
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)