Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15d08f
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155...    29   2.9  
08_02_0282 - 15274413-15274465,15274564-15275245                       28   5.0  
04_01_0145 + 1689148-1689261,1689431-1689621,1689699-1689796,169...    28   6.7  

>05_04_0226 +
           19215091-19215172,19215281-19215394,19215508-19215590,
           19215682-19215820,19215862-19216191,19216414-19216693,
           19216795-19216956,19217134-19217349,19217458-19217495,
           19217597-19217760,19217833-19217946,19218042-19218083,
           19218180-19218983
          Length = 855

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 1/110 (0%)
 Frame = +1

Query: 61  LNDAKTCNLLAKGILELYEPPLTTINTHLKELTEKQDAIHNTIKFERQKLEDIQ-NXXXX 237
           LN A     +  G       P  T    LK++TEK   I +  K   + LE +Q      
Sbjct: 507 LNFASRVRAIDHGPARKQADPAETFK--LKQMTEK---IRHEEKENAKLLESLQLTQLKY 561

Query: 238 XXXXXXIATNREKLLTISNSMMVLHKRVQSLQVRAANVEKAANTRAAISK 387
                 I T +EK+     +     +RV+ L+   AN +KAA   A  +K
Sbjct: 562 ASRENVIKTLQEKIREAEQTSKTYQQRVRELENELANEKKAARDTARSTK 611


>08_02_0282 - 15274413-15274465,15274564-15275245
          Length = 244

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +1

Query: 61  LNDAKTCNLLAKGILELYEPPLTTINTHLKELTEKQDAIHNTIKFERQKLE 213
           ++D    +++ + +   Y+P  T  NT  +E T ++  +H+  + ERQK E
Sbjct: 98  ISDGFLVHIIMRSLGPNYDPFKTKYNTQKEEWTIQELILHSVEEEERQKAE 148


>04_01_0145 +
           1689148-1689261,1689431-1689621,1689699-1689796,
           1693288-1693443,1694456-1695075,1695204-1695247,
           1695361-1695763,1696295-1696466,1696550-1697079
          Length = 775

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 261 CNIG*HCIQHCIILYIF*LLPLKFYC 184
           CN G HC    ++L +  LLPL+ +C
Sbjct: 6   CNEGSHCRLVIVVLLLILLLPLQTFC 31


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,574,288
Number of Sequences: 37544
Number of extensions: 281691
Number of successful extensions: 546
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)