Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15d08f
         (608 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific do...    25   1.9  
DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific doub...    25   1.9  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    24   4.4  

>DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific
           doublesex protein protein.
          Length = 265

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 118 PPLTTINTHLKELTEKQDAIHNTI 189
           PP    N H+ +L+E +D  HN I
Sbjct: 104 PPEPVANIHIPKLSELKDLKHNMI 127


>DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 622

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 118 PPLTTINTHLKELTEKQDAIHNTI 189
           PP    N H+ +L+E +D  HN I
Sbjct: 104 PPEPVANIHIPKLSELKDLKHNMI 127


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 1/123 (0%)
 Frame = +1

Query: 34  TMENTEKADLNDAKTCNLLAKGILELYEPPLTTINTHLKELTEKQDAIHNTIKFERQKLE 213
           T  +T K  LN+       A+ +L + E  L  ++  +  L EKQ  + +       ++ 
Sbjct: 252 TQIDTIKQKLNECAVIAKKARDVLVVKEKSLEYLSNEIVVLEEKQSNLESA-----GRMG 306

Query: 214 DIQNXXXXXXXXXXIATNREKLLTISNSMMVLHKRVQSLQVRAANVEK-AANTRAAISKH 390
           ++ +          +    E+L  + + +  L   ++  + R  N E   A T + I  +
Sbjct: 307 ELLSELQAKLAWRNVIDQEEQLAAVDDELKKLRTSIEEQEHRIRNREALVAKTDSTIDTY 366

Query: 391 TSN 399
            ++
Sbjct: 367 RAD 369


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 640,690
Number of Sequences: 2352
Number of extensions: 12850
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 59291487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)