Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15d04r
(880 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces... 293 2e-80
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 29 0.66
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 28 1.5
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 28 2.0
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3... 27 3.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.5
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 4.7
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 8.1
>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 293 bits (719), Expect = 2e-80
Identities = 142/197 (72%), Positives = 164/197 (83%)
Frame = -2
Query: 864 AELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN 685
AELNEF TREL+E+GYSG EVRVTP RSEIII AT TQ VLGEKGRRIRELT++VQKRF
Sbjct: 21 AELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGRRIRELTALVQKRFK 80
Query: 684 IPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 505
E +VELYAEKV RGLCA+AQ ESLRYKL+ GLAVRRA YGVLR++ME+GA+GCEVV+
Sbjct: 81 FAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVMEAGAKGCEVVI 140
Query: 504 SGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKN 325
SGKLR RAKSMKF DG MIHSG P D++++ATRHVLLRQGVLG+KVKIMLP + K
Sbjct: 141 SGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQGVLGVKVKIMLP---EPKT 197
Query: 324 GPKKPQPDHILVTEPKD 274
KK PD ++V +PK+
Sbjct: 198 RQKKSLPDIVVVLDPKE 214
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 29.5 bits (63), Expect = 0.66
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = -1
Query: 271 ALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQINLFGREVGPAVNNFLEKIPVY 92
A E +A S L N+ + AAIT K + + F +E G V E+I
Sbjct: 74 AHEAFIASKIVSGDLKTNL---QVNAAITYCKDKDTIDESEFDKETGVGVVLTPEQIEQL 130
Query: 91 LTDYAAE-VSRVLEYVAQLV 35
+ DY AE S++LE QL+
Sbjct: 131 VGDYVAENKSKILEQRYQLL 150
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 28.3 bits (60), Expect = 1.5
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +2
Query: 32 DDELGDVLQNTADLGCVVRQVDRDLL*EVVDGWSNFASEEIDL--EVRFDIANSYCSSDV 205
+DEL +VL + V+ ++D + L E D A ++ + ++ ++
Sbjct: 479 EDELSNVLVSIPSRTSVLERLDTNPLNESTDAVVGCAQLYYPSLGKILISLTRNWQTTVF 538
Query: 206 TDNDVVCEGDGSGSLSNDVLKGKSLGS 286
D+D+ G SLSN++ KSLG+
Sbjct: 539 DDSDLATMGVNKESLSNEMDYSKSLGT 565
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -2
Query: 552 LRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 397
+ F ME + + ++ +L+ S K D ++I GD ND + T+ RH
Sbjct: 1868 IHFAMEFLHKNTKSLLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRH 1919
>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 449
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = -1
Query: 193 AITIGDVKSNLQINLFGREVGPAVNNFL-EKIPVYLTDYA 77
AITIGD + L + +++GP V +F + +P +LT ++
Sbjct: 178 AITIGDNSTLLYTSWLFQKIGPPVLSFSDDDVPGFLTHFS 217
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 164 PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRP 42
PP S+ S S +P + P +P L QP + V+ P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 4.7
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -2
Query: 768 MATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAI-AQAESLRYKL 592
MATR Q RR E + +QK +N + ++EL E+V G + + + RY +
Sbjct: 726 MATRIQRAWRSYVRRRSEAAACIQKLWNRNKVNMEL--ERVRNEGTKLLQGKKQRRRYSI 783
Query: 591 IG 586
+G
Sbjct: 784 LG 785
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -1
Query: 487 STCQINEVCR-WTHDPLWRPLQ*LRQHCYQT 398
+ C + CR W P W+ + + Q+C+ T
Sbjct: 1420 TVCNRKKACRLWNFKPHWQVITRIPQYCHDT 1450
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,565,557
Number of Sequences: 5004
Number of extensions: 75099
Number of successful extensions: 218
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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