Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15d04r
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 328 3e-90
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499... 32 0.53
02_05_0237 + 27095817-27097433 30 2.1
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414... 29 3.7
01_06_1070 - 34286660-34287380,34288020-34288094,34288534-342886... 29 3.7
12_01_0506 + 4017568-4017716,4018171-4018474 29 4.9
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 29 4.9
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 29 6.5
02_05_0263 - 27257150-27259213 29 6.5
12_02_0820 + 23437811-23440230,23440336-23440534 28 8.6
08_02_0478 + 17621678-17623768 28 8.6
05_03_0478 - 14526180-14526578 28 8.6
01_07_0132 - 41298184-41298558,41298648-41298729,41298850-412989... 28 8.6
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 328 bits (807), Expect = 3e-90
Identities = 159/197 (80%), Positives = 172/197 (87%)
Frame = -2
Query: 864 AELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN 685
AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGRRIRELTSVVQKRFN
Sbjct: 21 AELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFN 80
Query: 684 IPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 505
PE VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+V
Sbjct: 81 FPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIV 140
Query: 504 SGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKN 325
SGKLR QRAKSMKF DG MI SG P N Y+++A RHVLLRQGVLGIKVKIML WD +GK
Sbjct: 141 SGKLRAQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQ 200
Query: 324 GPKKPQPDHILVTEPKD 274
GP P PD + + PKD
Sbjct: 201 GPMTPLPDLVTIHAPKD 217
>03_05_1122 +
30546314-30549277,30549615-30549693,30549857-30549945,
30550422-30550538,30550873-30551111,30552279-30552365,
30552732-30552831,30553319-30553532,30553617-30553777
Length = 1349
Score = 32.3 bits (70), Expect = 0.53
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = +2
Query: 131 SNFASEEIDLEVRFDIANSYCSSDVTDN---DVVCEGDGSGSLSNDVLKGKSLGSVT 292
SN +D E +A C D+ + D++ EGD G L+ D + G VT
Sbjct: 54 SNSMKMHVDAETAGGVALDVCKGDILEKKQCDIIAEGDRGGVLTVDTCNAEEDGEVT 110
>02_05_0237 + 27095817-27097433
Length = 538
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 263 LKGKSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLIPS 376
++G L +V R GCG+FG + W G + L+PS
Sbjct: 150 VRGAHLPAVIRALVGCGWFG--IESWIGGRAVFLLLPS 185
>05_04_0322 +
20239793-20240127,20240176-20240728,20241317-20241425,
20244456-20244723,20244943-20245197,20245594-20246539
Length = 821
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -1
Query: 649 GGYSWSLRYRPG-RISKIQAYRRSRCTSCLLWC 554
G SWS RY+ ISK Y RC C++ C
Sbjct: 665 GALSWSRRYQIAIGISKGLPYLHERCRDCIIHC 697
>01_06_1070 -
34286660-34287380,34288020-34288094,34288534-34288636,
34288866-34289091
Length = 374
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +2
Query: 140 ASEEIDLEVRFDIANSYCSSDVTDNDV-VCEGDGSGSLSNDVLKGKSLGSVTRMWSGCGF 316
+S+EI+ R S + DV + E GSL+ +L+ +S S+T+ W+ C
Sbjct: 237 SSKEIESADRATEKLEMFKSQLKQKDVCLAENGNGGSLNTILLEKRSRWSITKSWTPCAI 296
Query: 317 FGPFLPC 337
+PC
Sbjct: 297 --GMVPC 301
>12_01_0506 + 4017568-4017716,4018171-4018474
Length = 150
Score = 29.1 bits (62), Expect = 4.9
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +2
Query: 62 TADLGCVVRQVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGS 241
T +L V+ + ++ DG ++ ++ E D+E++ D Y + DV + V E GS
Sbjct: 72 TGELDVAYIYVEEPEIVDLCDGSADNSNYEADMELKVDSEEEYVNMDVEVD--VGEATGS 129
Query: 242 GSLSNDVLK-GKSLGSVTR 295
G V + G++ GS +R
Sbjct: 130 GCKGKAVEEHGEASGSGSR 148
>02_01_0137 +
988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = -2
Query: 426 NDYVNTATRHVLLR----QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPK 277
++ +N H+ +R QGVL +++ + +Q +NGP+K + L+TE K
Sbjct: 359 SERINGIVNHLRIRGNPVQGVLQLEILRQIALPKQSQNGPRKSRLTISLMTEHK 412
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/76 (21%), Positives = 35/76 (46%)
Frame = +1
Query: 376 YSLPEKHMSGSSVDVVIARVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGARFHDETEN 555
+ L + + GS +++ V R D +++Y+ G ++ +NN +++G HD N
Sbjct: 739 FKLNQVCIDGSRDELLETDVIRQDIKALYQSIDMGLVSEATVCFNNVSSSGLSVHDTGGN 798
Query: 556 TIASTTYSETSDKLVS 603
I ++ +S
Sbjct: 799 VIGQGDQDSEKNRYLS 814
>02_05_0263 - 27257150-27259213
Length = 687
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +2
Query: 170 FDIANSYCSSDVTDNDV-----VCEGDGSGSLSNDVLKGKSLGSVTRMWSGCGFFG 322
F I + +CS +N + VC + + D+L+ KSL S T M GC +G
Sbjct: 360 FGIRHGFCSDGDVENHILYMYSVCGKPAAARVIFDLLEQKSLVSWTAMMKGCLPYG 415
>12_02_0820 + 23437811-23440230,23440336-23440534
Length = 872
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +2
Query: 35 DELGDVLQNTADLGC-VVRQVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTD 211
D+L +Q+ ++ VR + + + ++ WS+ EEI DI + Y S D
Sbjct: 252 DKLATYMQDIFNITAKAVRGDEESVALQAIEFWSSICDEEI------DILDEYSSEFTAD 305
Query: 212 NDVVC 226
+DV C
Sbjct: 306 SDVPC 310
>08_02_0478 + 17621678-17623768
Length = 696
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -2
Query: 468 KFVDGLMIHSGDPCNDYVNTATRHVLLRQGVL 373
K + GL+IHSG ND+V+++ + + G++
Sbjct: 421 KQIHGLVIHSGFASNDFVSSSLIFMYSKSGII 452
>05_03_0478 - 14526180-14526578
Length = 132
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = -3
Query: 137 SWTSRQQLPREDPCLPDGLRS---RGQPCSGVRRPTRH 33
SW RQ+ ED DG R RGQ RRP RH
Sbjct: 54 SWARRQRRDEEDHRQHDGYRGARRRGQEDHRRRRPRRH 91
>01_07_0132 -
41298184-41298558,41298648-41298729,41298850-41298977,
41299059-41299157,41299279-41299434,41300709-41300783,
41301962-41302137,41303210-41303252,41303336-41303503,
41303584-41303731,41306316-41306587
Length = 573
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/75 (20%), Positives = 35/75 (46%)
Frame = -2
Query: 579 AVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATR 400
A R A G++ + + G G SG+ RGQ +++ ++G + +Y++ A
Sbjct: 472 AARLAAAGIVGILKKLGRDGSGAASSGRGRGQPRRTVVAIEGGLYQGYPVFREYLDEALV 531
Query: 399 HVLLRQGVLGIKVKI 355
+L + + +++
Sbjct: 532 EILGEEVARNVTLRV 546
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,540,977
Number of Sequences: 37544
Number of extensions: 556499
Number of successful extensions: 1912
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1911
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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