Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15c19r
         (904 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    25   1.2  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    25   1.2  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   1.2  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   1.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   5.0  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 7/25 (28%), Positives = 20/25 (80%)
 Frame = +2

Query: 713 TRHYLTVVN*EGYREYILSMVLESS 787
           +++Y+T+++  G+R++I +M+  +S
Sbjct: 10  SKYYVTIIDAPGHRDFIKNMITGTS 34


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 7/25 (28%), Positives = 20/25 (80%)
 Frame = +2

Query: 713 TRHYLTVVN*EGYREYILSMVLESS 787
           +++Y+T+++  G+R++I +M+  +S
Sbjct: 26  SKYYVTIIDAPGHRDFIKNMITGTS 50


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 7/25 (28%), Positives = 20/25 (80%)
 Frame = +2

Query: 713 TRHYLTVVN*EGYREYILSMVLESS 787
           +++Y+T+++  G+R++I +M+  +S
Sbjct: 83  SKYYVTIIDAPGHRDFIKNMITGTS 107


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 7/24 (29%), Positives = 19/24 (79%)
 Frame = +2

Query: 716 RHYLTVVN*EGYREYILSMVLESS 787
           ++Y+T+++  G+R++I +M+  +S
Sbjct: 84  KYYVTIIDAPGHRDFIKNMITGTS 107


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -3

Query: 647 WTQRLGVMCQILTQSCQPHYCI-LW 576
           W+  LG +C + +  C P Y I +W
Sbjct: 527 WSHVLGWLCGLSSMLCIPGYMIYIW 551


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -3

Query: 647 WTQRLGVMCQILTQSCQPHYCI-LW 576
           W+  LG +C + +  C P Y I +W
Sbjct: 580 WSHVLGWLCGLSSMLCIPGYMIYIW 604


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 595 PIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTV 482
           P  +S  W +    W L  CKL+      S Y++ +T+
Sbjct: 88  PFELSVFWQQYPWQWGLGICKLRAYVSETSSYVSVLTI 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 271,765
Number of Sequences: 438
Number of extensions: 6330
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)