Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15c19f
         (581 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    25   0.72 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    25   0.72 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   0.72 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   0.95 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.2  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   5.1  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   5.1  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   5.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   6.7  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   6.7  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   6.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.9  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 7/25 (28%), Positives = 20/25 (80%)
 Frame = -3

Query: 435 TRHYLTVVN*EGYREYILSMVLESS 361
           +++Y+T+++  G+R++I +M+  +S
Sbjct: 10  SKYYVTIIDAPGHRDFIKNMITGTS 34


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 7/25 (28%), Positives = 20/25 (80%)
 Frame = -3

Query: 435 TRHYLTVVN*EGYREYILSMVLESS 361
           +++Y+T+++  G+R++I +M+  +S
Sbjct: 26  SKYYVTIIDAPGHRDFIKNMITGTS 50


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 7/25 (28%), Positives = 20/25 (80%)
 Frame = -3

Query: 435 TRHYLTVVN*EGYREYILSMVLESS 361
           +++Y+T+++  G+R++I +M+  +S
Sbjct: 83  SKYYVTIIDAPGHRDFIKNMITGTS 107


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 0.95
 Identities = 7/24 (29%), Positives = 19/24 (79%)
 Frame = -3

Query: 432 RHYLTVVN*EGYREYILSMVLESS 361
           ++Y+T+++  G+R++I +M+  +S
Sbjct: 84  KYYVTIIDAPGHRDFIKNMITGTS 107


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +3

Query: 501 WTQRLGVMCQILTQSCQPHYCI-LW 572
           W+  LG +C + +  C P Y I +W
Sbjct: 527 WSHVLGWLCGLSSMLCIPGYMIYIW 551


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +3

Query: 501 WTQRLGVMCQILTQSCQPHYCI-LW 572
           W+  LG +C + +  C P Y I +W
Sbjct: 580 WSHVLGWLCGLSSMLCIPGYMIYIW 604


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +1

Query: 157 ILSSSRDKTLIV---WKLTRDENNYGIPQKRLYGHSHFISDV 273
           I+SS  +KT+     +K   + NNY    K+LY + ++I  +
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQI 122


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +1

Query: 157 ILSSSRDKTLIV---WKLTRDENNYGIPQKRLYGHSHFISDV 273
           I+SS  +KT+     +K   + NNY    K+LY + ++I  +
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQI 122


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +1

Query: 157 ILSSSRDKTLIV---WKLTRDENNYGIPQKRLYGHSHFISDV 273
           I+SS  +KT+     +K   + NNY    K+LY + ++I  +
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQI 122


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -1

Query: 497 SWMVYLHSARVFQSLIVLSREPDTI*RLSTEKATESTSLVW 375
           SW     +  +F  L++L+   +++  LS  +   ST+L W
Sbjct: 2   SWQRVFLAVGLFGVLLLLTNADNSVHILSKYQLITSTTLNW 42


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 518 CHVSDSHPIMPTPLL 562
           CH  D++ ++ TP L
Sbjct: 463 CHADDAYMVVDTPFL 477


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 518 CHVSDSHPIMPTPLL 562
           CH  D++ ++ TP L
Sbjct: 463 CHADDAYMVVDTPFL 477


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 494 WMVYLHSARVFQSLIVLSRE 435
           W++YLH + V    +VL  E
Sbjct: 424 WIIYLHISDVVADDLVLLEE 443


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 494 WMVYLHSARVFQSLIVLSRE 435
           W++YLH + V    +VL  E
Sbjct: 424 WIIYLHISDVVADDLVLLEE 443


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 473 ARVFQSLIVLSREPDTI*RLSTEKAT 396
           A + Q+L  L R PDT+ +++  + T
Sbjct: 886 ANLTQTLDKLIRSPDTLRKIAQNRGT 911


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,047
Number of Sequences: 438
Number of extensions: 3982
Number of successful extensions: 17
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)