Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15c08r
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    29   0.67 
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    28   1.6  
SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    27   2.7  
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    26   6.3  
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    26   8.3  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    26   8.3  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   8.3  

>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +2

Query: 668 DESVEVS-SDSFTVIVYREDGAASEGERRSHNRVDRQQQRFTDLRASPMKEVKYNIPFSQ 844
           DE  E+   D F   +  E GA   G+ R H  +DRQ+Q    + A  + E +Y   + +
Sbjct: 162 DEEDEIGREDGF---IEEEVGADYVGDDRRHRELDRQRQELQSVDAERLAE-EYREKYGR 217

Query: 845 IETVRCSSSAQ*QR 886
            +TV   +S   QR
Sbjct: 218 SQTVVGDTSNVPQR 231


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 226 YAYVFYAESIRQAVDGGNEFVGTACNSYEEARNLRCSGPRDAIFGG 89
           YAY+ + + +  ++DG + F  +   SY+       S P  A FGG
Sbjct: 187 YAYLNFPQLVSLSIDGDDSFHPSLIESYQVGGYDGVSIPTPATFGG 232


>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 180 EVMSSSELLAIATKKLATSDALDPETPFSVELKLKKLKWVYT 55
           ++    + L IA +K ATS  +   T   V+ KL+  K++YT
Sbjct: 4   QISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYT 45


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = -3

Query: 793 VSEPLLLSVNSIMTSSFSLARRTIFTIHN-HGETVAGNFNAFVIPAHLAAEDVNVIA 626
           VS+ L+ S++ I + SFSL  + +F +HN  GE++        + A  ++++V  IA
Sbjct: 316 VSDMLIQSLSIINSPSFSLG-KIVFLVHNIDGESLIDERFQSALAAIASSKNVYFIA 371


>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 367 PDDANIVEVLHTTAGLIGYDYPLGDLDFY-PSGG 269
           P D +I  VLH TA +I   +    +DF+ P GG
Sbjct: 178 PLDFSITIVLHLTAVVISIIFSFAYMDFFLPRGG 211


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 261 KADAWTMPAPILTPMFSTPNLS 196
           KA +  M A +  P FSTPNLS
Sbjct: 297 KARSLLMDASLKLPQFSTPNLS 318


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = -3

Query: 853 SFNLGERDVVFHLFHRGSPQVSEPLLLSVNSIMTSSFSLARRTIFTIHNHGETVAGNFNA 674
           S N G+   + H F+R S +  + LL+   S +      ++   F        +   F  
Sbjct: 545 SLNFGKISFISHEFYRVSKRFLDILLIWFESYLVEELDNSKSIFFLF-----KIYKVFEV 599

Query: 673 FVIPAHLAAEDV 638
           FV+P   +AE++
Sbjct: 600 FVVPHFASAEEL 611


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,462,359
Number of Sequences: 5004
Number of extensions: 68369
Number of successful extensions: 197
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)