Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15c08f
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    33   0.045
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    26   3.9  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   5.1  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    25   9.0  

>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 32.7 bits (71), Expect = 0.045
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = -2

Query: 258 DESVEVS-SDSFTVIVYREDGAASEGERRSHNRVDRQQQRFTDLRASPMKEVKYNIPFSQ 82
           DE  E+   D F   +  E GA   G+ R H  +DRQ+Q    + A  + E +Y   + +
Sbjct: 162 DEEDEIGREDGF---IEEEVGADYVGDDRRHRELDRQRQELQSVDAERLAE-EYREKYGR 217

Query: 81  IETVRCSSSAQ*QRTLNQSVH 19
            +TV   +S   QR L  SV+
Sbjct: 218 SQTVVGDTSNVPQRLLLPSVN 238


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +1

Query: 133 VSEPLLLSVNSIMTSSFSLARRTIFTIHN-HGETVAGNFNAFVIPAHLAAEDVNVIA 300
           VS+ L+ S++ I + SFSL  + +F +HN  GE++        + A  ++++V  IA
Sbjct: 316 VSDMLIQSLSIINSPSFSLG-KIVFLVHNIDGESLIDERFQSALAAIASSKNVYFIA 371


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = +1

Query: 73  SFNLGERDVVFHLFHRGSPQVSEPLLLSVNSIMTSSFSLARRTIFTIHNHGETVAGNFNA 252
           S N G+   + H F+R S +  + LL+   S +      ++   F        +   F  
Sbjct: 545 SLNFGKISFISHEFYRVSKRFLDILLIWFESYLVEELDNSKSIFFLF-----KIYKVFEV 599

Query: 253 FVIPAHLAAEDV 288
           FV+P   +AE++
Sbjct: 600 FVVPHFASAEEL 611


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = -2

Query: 156 RQQQRFTDLRASPMKEV----KYNIPFSQIETVRCSSSAQ*QRTLNQSVHFHDLQ 4
           R    F     +P +++    K+NI F++  T   SSSA   + L   ++ H+++
Sbjct: 2   RNNTAFEQFTLNPCEQIPLDDKHNIGFNKNNTPDYSSSASSDQLLKNDINRHEME 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,388,836
Number of Sequences: 5004
Number of extensions: 45513
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)