Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15c04r
         (939 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al...    60   6e-10
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      29   0.72 
SPAC29B12.11c |||human WW domain binding protein-2 ortholog|Schi...    27   3.8  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    27   5.0  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   5.0  
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    26   8.8  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   8.8  

>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
           subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 59.7 bits (138), Expect = 6e-10
 Identities = 42/108 (38%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
 Frame = -2

Query: 938 SDTYIVFGEAXIEDLSPQATMAAAERFKAPET------TATGNDASTTGTTVAPIAXXXX 777
           ++ YIV G+  +ED++ QA      + +A ET      T    DA    T          
Sbjct: 67  NNAYIVLGKVTVEDMAAQARAFNESQKQATETKEEAAITEESGDAQPADTAKIE-ESFEQ 125

Query: 776 XXXXXXXXXXXXXXEIVMSQANVSRAKAVRALKNNQSDIVNAIMELTM 633
                         E+VM+QANVSRAKAV ALK N SD+VNAIM LTM
Sbjct: 126 EKAVDETGVDAKDIELVMAQANVSRAKAVTALKENNSDVVNAIMSLTM 173


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 119 FYCYYFYKLYISIVSFLYMILSFQLLYAVGLH 214
           F+C++FY    S  SFL+  L F   + +  H
Sbjct: 107 FFCFFFYFSLFSFFSFLFTSLHFNFFFRLCRH 138


>SPAC29B12.11c |||human WW domain binding protein-2
           ortholog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +1

Query: 142 IVHKYCIFSLYDSIFPIIVCCWPSPIKTTSTTKGAYLVVN 261
           ++   C+F  +D +  I + C P  +K+ + TKG   + N
Sbjct: 18  LLENECMFDCFDGV-AISILCKPPSLKSWTCTKGLLCLTN 56


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 878 MAAAERFKAPETTATGNDASTTGTTVA 798
           M+AA   +AP  T +G  +STT ++VA
Sbjct: 627 MSAATTSRAPSGTTSGTASSTTSSSVA 653


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 878 MAAAERFKAPETTATGNDASTTGTTVA 798
           M+AA   +AP  T +G  +STT ++VA
Sbjct: 627 MSAATTSRAPSGTTSGTASSTTSSSVA 653


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 11  YTLTEAYFGFQHEGRTSLFLNAYFTYIMSDISILSIFY-CYYFYK 142
           Y +TE    FQ +     FLN+   Y + + ++LSIFY C++F K
Sbjct: 51  YLITE----FQLQRCMEKFLNSPL-YQLDENAVLSIFYDCFFFLK 90


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +2

Query: 128 YYFYKL--YISIVSFLYMILSFQLLYAVGLH 214
           YYFY +  Y+ +VS  Y  +SF ++YA+ L+
Sbjct: 182 YYFYPVISYLVVVSLAY--VSFSIIYALFLN 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,478,435
Number of Sequences: 5004
Number of extensions: 65802
Number of successful extensions: 190
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)