Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15c04r
         (939 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    27   0.32 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   9.2  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 26.6 bits (56), Expect = 0.32
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 450 ITLNLQIVQTLLMIFFFTSSIQFNISP-IMHVFIRLFVQLLMLRAT 584
           +TL++ I   +L + F + S   N+SP +  VF+    +LLM+R T
Sbjct: 323 VTLSIWITVCVLNVHFRSPSTH-NMSPWVRQVFLNWMPRLLMMRRT 367


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -3

Query: 634 CRRSLRHNILCHCC*F 587
           CR       LCHCC F
Sbjct: 737 CRYEAHCFALCHCCDF 752


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 128 YYFYKLYISIVSFLYMILSFQL 193
           YY + L +S + FL + L F+L
Sbjct: 70  YYLFNLAVSDLLFLILGLPFEL 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,827
Number of Sequences: 438
Number of extensions: 5053
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)