Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15c02r
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    31   0.22 
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    29   0.68 
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    29   0.90 
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    27   2.7  
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    26   6.3  
SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr...    26   6.3  
SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces pombe...    26   8.4  

>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 21/96 (21%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
 Frame = -3

Query: 588 LNPIKLSKRQRKRRKHLKDRTKKGKTQAQN-SLLQMNEMEKICMFCKKSVKTQILKPDRI 412
           LNP++   R++K+R+ +K R ++ K   +  S   M++ME+      +   +Q L     
Sbjct: 7   LNPVQAESRKKKKREQIKVREERAKRHEERLSHRNMSQMERQLSELTQLESSQAL---NA 63

Query: 411 KPKAIMENNMKNS--INNRSIEKKEIGSNKAKPTKQ 310
             K +++N  ++   +  ++I    +G  ++  TK+
Sbjct: 64  HDKQLLQNLQRDMAIMKKKNIHGHRVGRVESDKTKE 99


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
 Frame = -3

Query: 795 TETKIAFLYKIASSLPSNISNNLQNVLK-SYYLMKCKEVTKGYGLPDKHFSTAARCPHCC 619
           T + +  LY+ ASS  +N+ ++L NV+  S  L +  E +  +     + S+  R  H  
Sbjct: 516 TNSAMTSLYQNASSADNNLGSSLPNVVPLSRGLTQSNETSNTFPAASSNISSQLRELHTK 575

Query: 618 LEWKKGT--NIK--LNPIKLSKRQRKRRKHLKDRTKKGKTQAQNSLLQMNEM 475
           ++  + T  N +   N I+ S  Q +    + +R    +T + +SLL  N M
Sbjct: 576 IDELRETVSNFRADYNSIRTSLNQLEAASGINERI---QTTSADSLLNSNGM 624


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 24/123 (19%), Positives = 52/123 (42%), Gaps = 1/123 (0%)
 Frame = -3

Query: 597 NIKLNPIKL-SKRQRKRRKHLKDRTKKGKTQAQNSLLQMNEMEKICMFCKKSVKTQILKP 421
           +I  NP+ + +       K  K RTK G    +   ++ +E +  C+ C K+ +     P
Sbjct: 8   SINSNPLYIPNPNVEPTPKPTKRRTKTGCLTCRRRRIKCDETKPFCLNCTKTNRECEGYP 67

Query: 420 DRIKPKAIMENNMKNSINNRSIEKKEIGSNKAKPTKQVNDRISQNINIYSNTIEVFKLNN 241
           +       M +     ++  S ++  I ++ A  + Q  D  S +     NT ++ ++ +
Sbjct: 68  NSAAQMQAMGSVSPPELSVHSAQQPLIPTSIASSSAQTGDTFSGSSQSNFNTNDLNQMTS 127

Query: 240 KNN 232
            +N
Sbjct: 128 SSN 130


>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 20/87 (22%), Positives = 37/87 (42%)
 Frame = -3

Query: 564 RQRKRRKHLKDRTKKGKTQAQNSLLQMNEMEKICMFCKKSVKTQILKPDRIKPKAIMENN 385
           ++ KR+KH   +  K KT    S L   ++EKI    KK  K +  +    K K+   + 
Sbjct: 164 KREKRKKHSSKKKSKKKTST-GSALDPKKLEKITKKKKKEHKKKDKESSSKKRKSGSSDK 222

Query: 384 MKNSINNRSIEKKEIGSNKAKPTKQVN 304
            +       ++ K   ++  +  K+ N
Sbjct: 223 EEKKKKKIKLKDKPESTSSVEKVKEGN 249


>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 388 VLHDSLWFNSIRFKDLCFNTFLAKHAYLFHFIHLQQ 495
           +L ++ WF S+RF+   F+  LAK      F+++ +
Sbjct: 10  ILKNNFWFASVRFQSGGFSEKLAKGPSFADFLNMDK 45


>SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 184

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 37/164 (22%), Positives = 67/164 (40%), Gaps = 2/164 (1%)
 Frame = -3

Query: 792 ETKIAFLYKIASSLPSNISNNLQNVLKSYYLMKCKEVTKGYGLPDKHFSTAARCPHCCLE 613
           E K+ FL  IA+   +     +   L S+YL +   + + + L     +    C  C   
Sbjct: 4   ERKLQFLLSIAAETYA-----ISPSLSSHYLRRMFSLLEEWNLETDPKTLLHGCSKCGSL 58

Query: 612 WKKGTNIKLNPIKLSKRQRKRRKHLKDRTKKGKTQAQNSLLQMNEMEKICMFCKKSVKTQ 433
           +  G NIKL  I     +RK R  L    KKG+     + L++N     C+ C    +  
Sbjct: 59  FIFGRNIKLRTI---SSERKARTDL----KKGEVSRLGTNLEIN-----CLVCSYVHEIP 106

Query: 432 ILKPDRI--KPKAIMENNMKNSINNRSIEKKEIGSNKAKPTKQV 307
           +  P R+    +A+    +  S + +   +K   + K K  +++
Sbjct: 107 LGVPLRLHQSKQALRAKAIAESSSTKLESRKSAHNAKVKQRQRL 150


>SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -3

Query: 348 KEIGSNKAKPTKQVNDRISQNINIYSNTIEVFKLNNKNNTLASQV 214
           K + S+ AK   ++ND +S  I+     I V +LN  N+T+  ++
Sbjct: 66  KNVFSSVAKKYDEMNDAMSLGIHRLWKNIFVSRLNPGNSTVPMKI 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,886,411
Number of Sequences: 5004
Number of extensions: 52688
Number of successful extensions: 192
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)