Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15c02r
         (896 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.9  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   2.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.6  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   8.7  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +1

Query: 163 ILVLPLFIIVYYFWW 207
           +  +PLF+I+Y +W+
Sbjct: 224 VYFVPLFLIIYSYWF 238


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +1

Query: 163 ILVLPLFIIVYYFWW 207
           +  +PLF+I+Y +W+
Sbjct: 100 VYFVPLFLIIYSYWF 114


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 312 QVNDRISQNINIYSNTIEVFKLNN 241
           ++N  I+QNI+   NTI  ++ N+
Sbjct: 412 EINQNIAQNIDHAKNTIIDYRNND 435


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
 Frame = -3

Query: 576 KLSKRQRKRRKHLKDRTKK-----GKTQAQNSLLQMNEMEKICMFCKKSVKTQILKPDRI 412
           +  K   ++ K L++RT +      + + QNS     E  K     K+  + +  +    
Sbjct: 251 RYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRERSKERSRDRTERERSR 310

Query: 411 KPKAIMENNMKNSINNRSIEKKEIGSN 331
           +PK I   + K   NN +       +N
Sbjct: 311 EPKIISSLSNKTIHNNNNYNNNNYNNN 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,760
Number of Sequences: 438
Number of extensions: 3502
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)