Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15c02f
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1062 + 9366995-9367039,9367896-9368117                           29   2.4  
09_04_0319 + 16649954-16649971,16650086-16650139,16651527-166516...    28   4.2  
02_03_0215 + 16505994-16506542,16506803-16507894                       27   9.8  
01_06_1260 - 35820781-35821161,35821163-35821420,35821524-35821976     27   9.8  
01_05_0105 - 18155135-18155297,18155379-18155515,18155621-181557...    27   9.8  

>07_01_1062 + 9366995-9367039,9367896-9368117
          Length = 88

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 360 KDRTKKGKTQAQNSLLQMNEMEKICMFCKK 449
           K   KK K+Q  +   Q+  MEKIC+F K+
Sbjct: 31  KKENKKNKSQDDSKTFQVCLMEKICLFPKQ 60


>09_04_0319 +
           16649954-16649971,16650086-16650139,16651527-16651603,
           16651928-16651976,16654534-16654782
          Length = 148

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 102 TETKIAFLYKIASSLPSNISNNLQNVLKSYYLMKCKEVT 218
           TET + ++ K+ +   SN+   + +V++ + L K KE T
Sbjct: 57  TETYVQYIVKLDNKFDSNLMKKILSVIEVFELCKKKEQT 95


>02_03_0215 + 16505994-16506542,16506803-16507894
          Length = 546

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 545 LYTTIVDTIFHVVLHDSLWFNSIRFKDLCFN 453
           L+  ++  + H+ +   LW NS + K+LCFN
Sbjct: 426 LFLEVLGKLPHLAIL-RLWMNSFQSKELCFN 455


>01_06_1260 - 35820781-35821161,35821163-35821420,35821524-35821976
          Length = 363

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 135 ASSLPSNISNNLQNVLKSYYLMKCKEVTKGYGLPDKHFSTAARCPH 272
           +SSLPS+  NN+Q  + S+ L    ++T  +G     FS+++   H
Sbjct: 70  SSSLPSSYYNNIQRSISSHSLPHHLQLTDHFG--GAFFSSSSSSSH 113


>01_05_0105 -
           18155135-18155297,18155379-18155515,18155621-18155734,
           18155768-18155806,18156838-18156993
          Length = 202

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 303 IKLNPIKLSKRQRKRRKHLKDRTKKGKTQ 389
           +K  P+    R  + +KH+ +R K+GKT+
Sbjct: 128 LKAIPLITKIRHERHKKHITERQKQGKTK 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,088,365
Number of Sequences: 37544
Number of extensions: 186060
Number of successful extensions: 429
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)