Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15c02f
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27080-3|CAA81604.3|  379|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AF016449-4|AAG23998.3|  330|Caenorhabditis elegans Serpentine re...    29   1.7  
U46753-9|AAA85765.1|  226|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U70854-5|AAB09157.1|  589|Caenorhabditis elegans Dnaj domain (pr...    29   2.9  
AF040652-5|AAB95022.2|  378|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z71262-4|CAA95814.1|  775|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U37532-1|AAC05308.1|  438|Caenorhabditis elegans HMG-box protein...    28   5.0  
AF043703-1|AAK21504.1|  437|Caenorhabditis elegans Posterior pha...    28   5.0  
Z73971-1|CAA98249.2|  929|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z35599-2|CAD91629.2|  584|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z35599-1|CAA84659.2|  581|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    27   6.7  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    27   6.7  
AF224743-1|AAF82248.1|  929|Caenorhabditis elegans leucine-rich ...    27   6.7  
AF016441-3|AAB65909.2|  744|Caenorhabditis elegans Hypothetical ...    27   8.8  

>Z27080-3|CAA81604.3|  379|Caenorhabditis elegans Hypothetical
           protein F55H2.7 protein.
          Length = 379

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 342 KRRKHLKDRTKKGKTQAQNSLLQMNEMEKICMFCKKSV 455
           +RR+   D   KGK +      + +E +  C FC+K++
Sbjct: 227 ERRQREYDSFLKGKYEPSKKTFKFDERDNYCQFCQKTI 264


>AF016449-4|AAG23998.3|  330|Caenorhabditis elegans Serpentine
           receptor, class t protein16 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 444 CKTCISFPFHSFAAKSFVLVFSPF*FYPLNVFFVSS 337
           C TC +F  HSFA   F L    F  YPL +F + S
Sbjct: 93  CDTCATF-IHSFATGIFGLFGIAFCDYPLLIFILGS 127


>U46753-9|AAA85765.1|  226|Caenorhabditis elegans Hypothetical
           protein C34F11.1 protein.
          Length = 226

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
 Frame = +3

Query: 201 KCKEVTKGYGLPDKHFSTAAR--CPHCCLEWKKGTN----IKLNPIKLSKRQRKRR 350
           KC +V        K F T+A   CP C  EWK   +    +K++ +++ KRQ++ R
Sbjct: 170 KCLKVIGCKKCVKKWFDTSASKACPLCRFEWKLHRDNPDVVKISTLEVLKRQKQNR 225


>U70854-5|AAB09157.1|  589|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 11 protein.
          Length = 589

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 321 KLSKRQRKRRKHLKDRTKKGKTQAQNSLLQMNEMEKICM 437
           K   +QRKR K L D         ++ L +M  +E+IC+
Sbjct: 357 KAMSQQRKRLKKLADEAGHWTENPRDKLTEMERIERICI 395


>AF040652-5|AAB95022.2|  378|Caenorhabditis elegans Hypothetical
           protein T05A8.5 protein.
          Length = 378

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 497 SLWFNSIRFKDLCFNTFLAKHAYL 426
           ++W NS     +C+  F+AKH+ +
Sbjct: 91  NMWSNSCEINKICYRNFIAKHSLI 114


>Z71262-4|CAA95814.1|  775|Caenorhabditis elegans Hypothetical
           protein F22D6.5 protein.
          Length = 775

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +3

Query: 330 KRQRKRRKHLKDRTKKGKTQAQNSLLQMNEMEKICMFCKKSVKTQI-LKPDRIKPKAIME 506
           K+ +K +KH KD  KK K + ++   +  EME      KK    ++  K D  K K   E
Sbjct: 46  KKHKKEKKHKKD--KKHKKEKKHKREKEVEMENDGPPAKKRTLEEVDTKKDESKKKEAKE 103

Query: 507 NNMKN 521
           ++  N
Sbjct: 104 SSRNN 108


>U37532-1|AAC05308.1|  438|Caenorhabditis elegans HMG-box protein
           protein.
          Length = 438

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 1/123 (0%)
 Frame = +3

Query: 99  MTETKIAFLYKIASSLPSNISNNLQNVLKSYYLMKCKEVTKGYGLPDKHFST-AARCPHC 275
           M E + A L +I ++   +   N + + K ++ +  +E  K + +  K   T   R P  
Sbjct: 203 MKENRKALLEEIGNNEKQSAELN-KELGKRWHDLSKEEQAKYFEMAKKDKETHKERYP-- 259

Query: 276 CLEWKKGTNIKLNPIKLSKRQRKRRKHLKDRTKKGKTQAQNSLLQMNEMEKICMFCKKSV 455
             EW    N  +N  K  KR+ K      +  KK + +       +N  E  C FCK+  
Sbjct: 260 --EWSARENYAVNKKKTKKRRDKSIPSENNDQKKCRAR-----FGVNNTEMWCKFCKRKK 312

Query: 456 KTQ 464
           K +
Sbjct: 313 KCE 315


>AF043703-1|AAK21504.1|  437|Caenorhabditis elegans Posterior
           pharynx defect protein 1 protein.
          Length = 437

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 1/123 (0%)
 Frame = +3

Query: 99  MTETKIAFLYKIASSLPSNISNNLQNVLKSYYLMKCKEVTKGYGLPDKHFST-AARCPHC 275
           M E + A L +I ++   +   N + + K ++ +  +E  K + +  K   T   R P  
Sbjct: 202 MKENRKALLEEIGNNEKQSAELN-KELGKRWHDLSKEEQAKYFEMAKKDKETHKERYP-- 258

Query: 276 CLEWKKGTNIKLNPIKLSKRQRKRRKHLKDRTKKGKTQAQNSLLQMNEMEKICMFCKKSV 455
             EW    N  +N  K  KR+ K      +  KK + +       +N  E  C FCK+  
Sbjct: 259 --EWSARENYAVNKKKTKKRRDKSIPSENNDQKKCRAR-----FGVNNTEMWCKFCKRKK 311

Query: 456 KTQ 464
           K +
Sbjct: 312 KCE 314


>Z73971-1|CAA98249.2|  929|Caenorhabditis elegans Hypothetical
           protein C50H2.1 protein.
          Length = 929

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 450 FSCKTCISFPFHSFAAKSFVLVFSPF*FYPLNVF 349
           F     I FP  S ++  FVLVF    F+P+N F
Sbjct: 656 FGFTATIGFPLLSLSSAKFVLVF----FFPINAF 685


>Z35599-2|CAD91629.2|  584|Caenorhabditis elegans Hypothetical
           protein F25F2.1b protein.
          Length = 584

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 321 KLSKRQRKRRKHLKDRTKKGKTQAQNSLLQMNEMEK 428
           +L K+  KR+K    + K+  TQ +NSL + N+ +K
Sbjct: 3   RLIKKIDKRKKKADKKKKEKSTQKKNSLEKKNKKDK 38


>Z35599-1|CAA84659.2|  581|Caenorhabditis elegans Hypothetical
           protein F25F2.1a protein.
          Length = 581

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 321 KLSKRQRKRRKHLKDRTKKGKTQAQNSLLQMNEMEK 428
           +L K+  KR+K    + K+  TQ +NSL + N+ +K
Sbjct: 3   RLIKKIDKRKKKADKKKKEKSTQKKNSLEKKNKKDK 38


>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18b protein.
          Length = 1459

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
 Frame = +3

Query: 351  KHLKDRTKKGKTQAQNSLLQMNEMEKICMFCKKSVKTQILK--PDRIKPKAIMENNMKNS 524
            K  +++  K +T+A    +Q+NE+E+     +K ++T   K   +R K K   + +++ +
Sbjct: 946  KKAENKATKEETRATTLQVQLNELEEKAKVVRKELETLKKKSTEERAKTKKEKDRDLQ-T 1004

Query: 525  INNRSIE 545
            I  +SIE
Sbjct: 1005 IRQQSIE 1011


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18a protein.
          Length = 1456

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
 Frame = +3

Query: 351  KHLKDRTKKGKTQAQNSLLQMNEMEKICMFCKKSVKTQILK--PDRIKPKAIMENNMKNS 524
            K  +++  K +T+A    +Q+NE+E+     +K ++T   K   +R K K   + +++ +
Sbjct: 946  KKAENKATKEETRATTLQVQLNELEEKAKVVRKELETLKKKSTEERAKTKKEKDRDLQ-T 1004

Query: 525  INNRSIE 545
            I  +SIE
Sbjct: 1005 IRQQSIE 1011


>AF224743-1|AAF82248.1|  929|Caenorhabditis elegans leucine-rich
           repeat-containingG protein-coupled receptor protein.
          Length = 929

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 450 FSCKTCISFPFHSFAAKSFVLVFSPF*FYPLNVF 349
           F     I FP  S ++  FVLVF    F+P+N F
Sbjct: 656 FGFTATIGFPLLSLSSAKFVLVF----FFPINAF 685


>AF016441-3|AAB65909.2|  744|Caenorhabditis elegans Hypothetical
           protein M03F8.3 protein.
          Length = 744

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 312 NPIKLSKRQRKRRKHLKDRTKKGKTQAQN 398
           +P +L + QRK+RK  +D  +K + Q  N
Sbjct: 60  DPDELKEYQRKKRKEFEDGIRKNRMQLAN 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,450,346
Number of Sequences: 27780
Number of extensions: 191467
Number of successful extensions: 752
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)