Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15b21f
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   3.0  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    27   3.0  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    26   3.9  
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    26   5.2  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.8  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    25   6.8  
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.0  

>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +1

Query: 412 IGNSNYAPTPAITNRNASRNTS---WN*KMAARSITRRAVVVTT*GIGFLRGSRVSIASY 582
           IG  N AP   +  ++ S+ T+       +   SITR A + +   +     ++  ++SY
Sbjct: 136 IGKDNAAPVENVNEKSTSQETAPPVSTVPIQFGSITRNAAIPSKPKVSGNMQNKSGVSSY 195

Query: 583 NGRTQPVTTGV 615
           + ++Q V + V
Sbjct: 196 SSKSQSVNSSV 206


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 618 KHPSCYRLCTSIVGRNAHTRPPQEADTSRRNDHCSSGNTS 499
           +HP   RL T +   NAH     E + +RR   C S  +S
Sbjct: 257 RHPYPDRLPTPLTPSNAHWVVHNEGNRNRRERPCRSNGSS 296


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +3

Query: 396 AYHRGYWEFKL-CTDPSNNEQECFEKYLLELEDGGTKYYPKSSGRYDVRYRLPAG 557
           AY   Y E  +   D    + +CFEK+ L  + G    +  S G   V+ R P G
Sbjct: 503 AYWPSYPESHIRLPDDMQQDLDCFEKFYLSKQVGKKISWYASLGHCIVKARFPLG 557


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 1   DSQRVKLLR*FVISSVFKFQHKT*EICSCHISLHSL 108
           D++R+K L+ F     F+F  +  + CSC +SL S+
Sbjct: 92  DAERIKSLQSF--EKDFQFSKEKFKPCSCQVSLSSV 125


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = +3

Query: 498 TKYYPKSSGRYDVRYRLPAGVSCEHCVLQWTYTAGNNWGVC 620
           + Y P  SGR  + Y  P G  C  C       +G   G C
Sbjct: 121 SSYAPPPSGRPRISYPYPPGYMCYKCHNTGYKDSGRPCGRC 161


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 568 SIASYNGRTQPVTTGVFAP 624
           S+  +NG TQPVT    AP
Sbjct: 497 SVRVFNGHTQPVTAVAIAP 515


>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +3

Query: 447 NEQECFEKYLLELEDGGTKYYPKSSGRYDVRYRLPAGVSCEHCVLQWTYTAGNN 608
           NE+E  ++  LELE    KY   ++G  +++     G+  +    +W   A  N
Sbjct: 94  NEEELLQRSRLELERKAKKYDQYAAGELEIKETEDDGILVDF-TRKWAEEAPEN 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,941
Number of Sequences: 5004
Number of extensions: 58121
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)