Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15b17f
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    26   3.8  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.7  

>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +2

Query: 407 AYHRGYWEFKL-CTDPSNNEQECFEKYLLELEDGGTKYYPKSSGRYDVRYRLPAG 568
           AY   Y E  +   D    + +CFEK+ L  + G    +  S G   V+ R P G
Sbjct: 503 AYWPSYPESHIRLPDDMQQDLDCFEKFYLSKQVGKKISWYASLGHCIVKARFPLG 557


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 509 TKYYPKSSGRYDVRYRLPAGVSCEHC 586
           + Y P  SGR  + Y  P G  C  C
Sbjct: 121 SSYAPPPSGRPRISYPYPPGYMCYKC 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,625,739
Number of Sequences: 5004
Number of extensions: 55180
Number of successful extensions: 162
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)