Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15b17f
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0460 - 23118221-23118406,23118417-23118671,23118763-231188... 30 1.3
04_03_1029 - 21835441-21835856,21836666-21836852 30 1.7
06_01_0912 - 7036420-7037503,7037599-7037819 29 2.2
12_02_0160 + 14585559-14586230 29 3.9
04_04_0387 + 24869594-24871480 29 3.9
01_05_0489 + 22652479-22653718,22653882-22654063,22654172-226542... 29 3.9
11_01_0385 + 2915532-2916482 28 5.1
05_01_0258 + 1984666-1984878,1985019-1985852 28 6.8
03_06_0058 - 31330067-31330978 28 6.8
01_01_0079 - 603019-603129,603302-603367,603489-603554,603681-60... 28 6.8
02_04_0549 + 23792603-23792782,23793417-23793600,23793777-237939... 27 8.9
>02_04_0460 -
23118221-23118406,23118417-23118671,23118763-23118851,
23119527-23119605,23121317-23121484,23121760-23122137
Length = 384
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 87 ICSCHISLHSLPCWRLFVHTAGW 155
I CH+ L SLPCW ++ + G+
Sbjct: 310 IRKCHLQLSSLPCWNVYSNYHGY 332
>04_03_1029 - 21835441-21835856,21836666-21836852
Length = 200
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 333 PPNSCGRGGESSYGSPQMPHFPLLVSH*RWKPPQLMP 223
P CGR E +G P+ P L +W+ P+L P
Sbjct: 97 PREECGRRDEGPHGPPRAPLPDLHRGREQWRAPRLRP 133
>06_01_0912 - 7036420-7037503,7037599-7037819
Length = 434
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/60 (28%), Positives = 22/60 (36%)
Frame = +2
Query: 437 LCTDPSNNEQECFEKYLLELEDGGTKYYPKSSGRYDVRYRLPAGVSCEHCVLQWTYTAGN 616
LC P Q F L GT Y + V R A SC++ V +W G+
Sbjct: 41 LCCSPPGGHQAVFSPLLQYFNGNGT--YSSNISSSGVEERSSAAASCDYSVGRWVRAPGH 98
>12_02_0160 + 14585559-14586230
Length = 223
Score = 28.7 bits (61), Expect = 3.9
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Frame = +2
Query: 110 AFVALLATVRAHGRVVEPASRA---SAWRAGFGTRINYDDDGINCGGFHRQWETNNGKCG 280
A + A+ R G E A R WR G + DG R+W+ G+ G
Sbjct: 46 AATGVAASPRGGGVAAETARRRRRRQRWRGGRRGEVETTGDG-------RRWQ---GRGG 95
Query: 281 ICGDPYDDSPPRPHELG 331
G D+PP P ELG
Sbjct: 96 AAGAQDLDAPPMPRELG 112
>04_04_0387 + 24869594-24871480
Length = 628
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 499 RWRHEVLPEEQWSLRREVS 555
RWR + LP EQW+L EV+
Sbjct: 266 RWRPDELPWEQWTLSAEVA 284
>01_05_0489 +
22652479-22653718,22653882-22654063,22654172-22654279,
22654364-22654467,22654570-22654657,22654760-22654870,
22654955-22655020,22656740-22656799,22656869-22657411,
22657646-22657765,22657845-22657964,22659083-22659136,
22659236-22659331,22660580-22660681
Length = 997
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 76 KHEKYAVVIFPCIRCLVGDCSCTRQG 153
++EK V+FPC+ ++ DC R+G
Sbjct: 795 RNEKTEEVVFPCVLKIIPDCVFNRKG 820
>11_01_0385 + 2915532-2916482
Length = 316
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 185 ARPKLEMRAPPPCRVHEQSPTRQRMQG 105
++ K E RAPPP + HE++P + + G
Sbjct: 102 SKHKDEERAPPPKKHHEKAPPKSKHHG 128
>05_01_0258 + 1984666-1984878,1985019-1985852
Length = 348
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +2
Query: 104 FLAFVALLATVRAHGRVVEPASRASAWRAGFG 199
F A ALL A G VVE A A+ W FG
Sbjct: 286 FHADWALLTGKEARGHVVEYAKNATLWNVDFG 317
>03_06_0058 - 31330067-31330978
Length = 303
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 201 VPKPARQAEARDAGSTTLPCARTVANKATNAR 106
VP P+RQA +G+TT P + V +AR
Sbjct: 79 VPPPSRQAVTGQSGTTTAPSGQCVGIALQSAR 110
>01_01_0079 -
603019-603129,603302-603367,603489-603554,603681-603824,
603932-604429
Length = 294
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 296 YDDSPPRPHELGGAYGNGV 352
YDD P P E+ G +GNGV
Sbjct: 20 YDDEPSMPLEILGYHGNGV 38
>02_04_0549 +
23792603-23792782,23793417-23793600,23793777-23793910,
23793997-23794182,23794709-23794783
Length = 252
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = +2
Query: 464 QECFEKYLLELEDGGTKYYPKSSGRYDVRYRLPAGVSCEHCVLQWTYTA 610
++C + YL E G+ + ++ ++ L G+ + CVL + +A
Sbjct: 137 KDCIDGYLGAFEKDGSNVFSDWVAKFQIKTVLVLGICTDFCVLDFASSA 185
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,147,631
Number of Sequences: 37544
Number of extensions: 458286
Number of successful extensions: 1460
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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