Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15b17f
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-1|AAK18854.2|  469|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U23147-1|AAC46692.2|  674|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z19156-1|CAA79563.1|  160|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AL137227-1|CAB70238.2|  611|Caenorhabditis elegans Hypothetical ...    28   6.1  
AF016688-3|AAB66076.2|  674|Caenorhabditis elegans Hypothetical ...    28   6.1  
Z83216-6|CAB62783.1|  534|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U32305-1|AAK18854.2|  469|Caenorhabditis elegans Hypothetical
           protein B0336.6 protein.
          Length = 469

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
 Frame = +2

Query: 290 DPYDDSPPRPHELGGAYGNGVIVAK---YSSGQ 379
           D  DD PP P  +GG+   GV   +   YSS Q
Sbjct: 365 DDMDDLPPPPESVGGSSAYGVFAGRTESYSSSQ 397


>U23147-1|AAC46692.2|  674|Caenorhabditis elegans Hypothetical
           protein C18H9.8 protein.
          Length = 674

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 185 ARPKLEMRAPPPCRVHEQSPT 123
           ARP   MRAPPP   +E  PT
Sbjct: 73  ARPPSAMRAPPPQPTYENRPT 93


>Z19156-1|CAA79563.1|  160|Caenorhabditis elegans Hypothetical
           protein T02C1.1 protein.
          Length = 160

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 155 PPCRVHEQSPTRQRMQGNMTTAYFSCFVLKFENTRYYE 42
           P CR H  +P R R   ++T +Y S    +  +T YYE
Sbjct: 43  PLCRAHTGNPIRNRQLESLTMSYVSS---RNISTEYYE 77


>AL137227-1|CAB70238.2|  611|Caenorhabditis elegans Hypothetical
           protein F58D5.1 protein.
          Length = 611

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/73 (26%), Positives = 27/73 (36%)
 Frame = +2

Query: 158 EPASRASAWRAGFGTRINYDDDGINCGGFHRQWETNNGKCGICGDPYDDSPPRPHELGGA 337
           +P  R   +    G   N+   G   GG   QW  N G  G   + +++    P   GG 
Sbjct: 454 KPVMRGRGFGGAGGGAGNHGQRGGQRGG--GQWGGNAGPGGYYPNHFNNGYDMPMPWGGG 511

Query: 338 YGNGVIVAKYSSG 376
           YG  +    Y  G
Sbjct: 512 YGGDMGYGAYGGG 524


>AF016688-3|AAB66076.2|  674|Caenorhabditis elegans Hypothetical
           protein F18A12.4 protein.
          Length = 674

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = +2

Query: 206 INYDDDGINCGGFHRQWETNNGKCGIC-GDPYD--DSPPRPHELGGAYGNGVIVAKYSSG 376
           + YD++G    G   +  T  GK G C  D YD  D P    ++ G +    I+A +   
Sbjct: 528 LGYDENGKPMDGIRLEHVTEYGKQGQCLVDQYDNYDDPVYGKKMNGTHSINEIIADWVGH 587

Query: 377 QV 382
           +V
Sbjct: 588 EV 589


>Z83216-6|CAB62783.1|  534|Caenorhabditis elegans Hypothetical
           protein C08F11.8 protein.
          Length = 534

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +1

Query: 475 REIPPGIRRWRHEVLPE 525
           +EI PG+R WR EVLPE
Sbjct: 236 KEIIPGVRSWR-EVLPE 251


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,342,272
Number of Sequences: 27780
Number of extensions: 339897
Number of successful extensions: 1136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)