Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15b13f
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1070 - 23744749-23744808,23746144-23746173,23746848-237469... 88 6e-18
04_04_1693 + 35404336-35404515,35405732-35406019,35406189-354062... 29 2.3
04_03_0936 + 20921918-20922409,20922807-20923199 29 4.0
02_05_0958 + 33073302-33073442,33073839-33073913,33074382-330744... 28 5.2
08_02_0019 - 11277241-11277559,11277819-11277951,11277987-112781... 28 6.9
03_02_0340 + 7635354-7635621,7635992-7636121,7636865-7636929,763... 28 6.9
06_02_0251 - 13478902-13478952,13478989-13479055,13479168-134793... 27 9.2
>07_03_1070 -
23744749-23744808,23746144-23746173,23746848-23746977,
23747431-23747519,23748486-23748513,23748700-23748965
Length = 200
Score = 87.8 bits (208), Expect = 6e-18
Identities = 43/101 (42%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Frame = +2
Query: 269 EHIKTRRVRIYQPAKNAMQSGTNNIHHWEMEFDTRQRWENPLMGWTSSGDPLSNV---KI 439
E +V IY PA+ A Q G+ + W++ F + Q+WENPLMGWTS+GDP +NV +
Sbjct: 92 EECAALQVVIYSPARTASQQGSGKVGRWKINFVSTQKWENPLMGWTSTGDPYANVGEAGL 151
Query: 440 QFRSPDEAIEHCEKNGWMWYIDVPKTEKDFKPKSYGLNFAW 562
F S D A EK+GW + + T K KSY NF W
Sbjct: 152 TFDSADSAKAFAEKHGWDYVVRKRHTPL-LKAKSYAENFKW 191
Score = 31.5 bits (68), Expect = 0.56
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 134 RKEAPKIENESVLALPEEARHQKALDSTIVVPTK-ADLSPILGVPEEHIKTRRVRIYQPA 310
R+ P + + P AR A S +V K ++ + G+PEEH++ R+VR +
Sbjct: 6 RRSLPSLGRTLLSPSPAPARMLSAAASDALVEIKPGEIGMVSGIPEEHLR-RKVRCFADL 64
Query: 311 KNAMQSG 331
+ + SG
Sbjct: 65 TSDLCSG 71
>04_04_1693 +
35404336-35404515,35405732-35406019,35406189-35406278,
35406487-35406564,35406638-35406718,35407300-35407350,
35407788-35407933,35408169-35408235,35408328-35408387,
35408472-35408501,35408776-35408835,35408936-35409052,
35409790-35409903,35410068-35410166,35410572-35410697,
35410774-35410848,35410958-35411029,35411167-35411277,
35411760-35411843,35413149-35413256,35414207-35414308,
35414393-35414455,35414524-35414598,35414901-35414972,
35415063-35415187,35415251-35415302,35415380-35415448,
35415525-35415540,35415941-35415989,35416607-35417180
Length = 1077
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +2
Query: 101 NVRYADADPTCRKEAPKIENESVLALPEEARHQKALDSTIVVPTKADLSPILGVPE 268
NV +P C KEA + N + A+ E A S +V+ + L PIL PE
Sbjct: 728 NVAAKQLNPQCVKEAVSVANNACWAIGELAIKIGKEISPVVITVVSCLVPILKSPE 783
>04_03_0936 + 20921918-20922409,20922807-20923199
Length = 294
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/27 (40%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +3
Query: 117 MQIQHAERKHLKLKTNP-FWPCQKKLG 194
+++ HA++ H K++TNP F+P K+ G
Sbjct: 141 LKLPHADQTHWKIRTNPRFFPYFKEFG 167
>02_05_0958 +
33073302-33073442,33073839-33073913,33074382-33074497,
33076863-33076977,33077100-33077228,33078907-33078954,
33079343-33079469,33079634-33079789,33080031-33080287,
33080431-33080580,33080660-33080714,33080793-33081088,
33081252-33081335,33081869-33081941,33082164-33082291,
33082905-33083090,33083179-33083316,33083394-33083519,
33083705-33083965
Length = 886
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = -2
Query: 273 CSSGTPKMGLRSAFVGTTIVESSAF*CRASSGKAKTDSFS 154
CSS T K+G++ TT V SS+ A GK K D FS
Sbjct: 457 CSSQTSKIGIKRTLSRTTSVFSSS---AALFGKLKRDVFS 493
>08_02_0019 -
11277241-11277559,11277819-11277951,11277987-11278179,
11278382-11278517,11278776-11278927
Length = 310
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 132 AERKHLKLKTNPFWPCQKKLGIKKHW 209
A R+ L +PFWP + + +K+ W
Sbjct: 263 ANREGLASVADPFWPSRDHVAVKRRW 288
>03_02_0340 +
7635354-7635621,7635992-7636121,7636865-7636929,
7637255-7637529,7640204-7640441,7641095-7641228,
7641340-7641414,7641675-7641776,7642154-7642263,
7642334-7642430
Length = 497
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/76 (22%), Positives = 36/76 (47%)
Frame = +2
Query: 74 RFKGAFSTYNVRYADADPTCRKEAPKIENESVLALPEEARHQKALDSTIVVPTKADLSPI 253
+F GAFS Y++ ++ + + ++V+A E+ ++ + + +
Sbjct: 384 QFPGAFSGYHLEVLESHQAGKLDISGTA-KAVIACFEKLGVSYDMNRMVKIRDPEQQLEM 442
Query: 254 LGVPEEHIKTRRVRIY 301
+GVPEEHI+ +Y
Sbjct: 443 VGVPEEHIEGHAFHLY 458
>06_02_0251 -
13478902-13478952,13478989-13479055,13479168-13479379,
13480144-13481540,13481574-13482432,13482537-13482836
Length = 961
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +2
Query: 164 SVLALPEEARHQKALDSTIVVPTKADLSPILGVPEEHIKTRRVRIYQPAKNAMQSGTNN 340
SV LPEE+ HQ A +ST + PEE I R+++++Q N + T +
Sbjct: 681 SVYDLPEESIHQSAKNSTENTSYNEE-------PEESIIKRKIKLHQEMCNDKDAQTKH 732
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,507,257
Number of Sequences: 37544
Number of extensions: 397820
Number of successful extensions: 1035
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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