Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15b06r
         (1142 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot...    28   2.8  
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    27   6.4  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    27   6.4  

>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
           Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 283

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 497 WHYRCPHPRRFLEWFCLHTLHYEASHT 577
           W+ +C  P  F  WF +  LH    HT
Sbjct: 126 WYQKCEIPMTFQSWFQITQLHLWILHT 152


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 419 TLCAQTGSDSVLIAHENCDKFYICWNHKPVVLSCPPNLLYNPS 291
           T C     D  +IA+E    FY+ W HK  +++    LL  P+
Sbjct: 270 TACKVWRVDMTMIAYETNRNFYMEWIHKKRIIN-TQELLVTPT 311


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -1

Query: 725 SLATEIC-AENDSDGVLVAHEHCTRFYKCFN--SRPVALICPPNL 600
           S AT +   E+D D  L+ H H T  +K FN   + + L+  P+L
Sbjct: 294 SAATSLAPVEDDEDDELLLHRHITNKHKDFNLHVKQLGLLHKPSL 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,135,352
Number of Sequences: 5004
Number of extensions: 81207
Number of successful extensions: 216
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 609607692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)