Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15b06f
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    27   3.6  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    26   4.8  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   6.4  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    26   6.4  

>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 444 PTPAWLLKYVLKKIQTVFWSPMSTAPDFTNVSIVIQ*PSFVLQICCI 584
           PTP W L YV    ++ F   +S      N+ + +  P FVL  C +
Sbjct: 75  PTPGWPLNYVFGNERSRFEKILSNFV-LRNLMLQVLAPCFVLLWCAV 120


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +2

Query: 452 SLATEIC-AEKDSDGVLVAHEHCTRFYKCFDSH--PVALICPPNL 577
           S AT +   E D D  L+ H H T  +K F+ H   + L+  P+L
Sbjct: 294 SAATSLAPVEDDEDDELLLHRHITNKHKDFNLHVKQLGLLHKPSL 338


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 27/117 (23%), Positives = 48/117 (41%)
 Frame = +3

Query: 363 TTMMLIVKVTMAVEETETKTITLEMDTPTPAWLLKYVLKKIQTVFWSPMSTAPDFTNVSI 542
           T M  I  +T  +EET T T  +E  T  P   +   + +  T+     +T P     +I
Sbjct: 58  TPMEEITTITTPMEETTTITPMVETTTILPMAAMTTPMVETTTIPTVETTTTPMVETTTI 117

Query: 543 VIQ*PSFVLQICCIILITSSATGLIMXSVETESFXKTTRMLIVKVTMAVEERNETIP 713
               P  +++   I  +  +   L+  ++ T     TT + +  +T  +EE   T P
Sbjct: 118 T---P--MVETTTITPMVEAMITLMEETMTTPMEETTTILPMAAMTTPMEETTTTTP 169



 Score = 25.8 bits (54), Expect = 6.4
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = +3

Query: 327 IM*SVETEPFQKTTMML-IVKVTMAVEETETKTITLEMDT-PTPAWLLKYVLKKIQTVFW 500
           +M    T P ++TT +L +  +T  +EET T T  +E  T PT   +   +++ +  +  
Sbjct: 136 LMEETMTTPMEETTTILPMAAMTTPMEETTTTTPMVETTTIPTVETMTTPMVEAMTILPM 195

Query: 501 SPMSTAPDFTNVS 539
           + M+T  + T  +
Sbjct: 196 AAMTTPMEETTTT 208


>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1150

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 539  DSHPVALICPPNLLYNPNNEQCD 607
            D H +A +  PN+LY+ +N+  D
Sbjct: 996  DIHNLATVITPNILYSKSNDPVD 1018


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,655,578
Number of Sequences: 5004
Number of extensions: 49347
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)