Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15b06f
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0285 - 14604499-14604608,14604692-14605203,14605339-146054...    31   0.94 
03_05_0456 - 24498212-24499581,24502660-24503071                       29   2.9  

>01_03_0285 -
           14604499-14604608,14604692-14605203,14605339-14605418,
           14605597-14605699,14605759-14605907,14606088-14606180,
           14606289-14606675,14607690-14608124,14608198-14608311,
           14608405-14608453,14608684-14608843,14608941-14609499
          Length = 916

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 473 AEKDSDGVLVAHEHCTRFYKCFDSHPVALI 562
           +EKD DGV+  H HC+  Y+  D+    ++
Sbjct: 806 SEKDKDGVIELHNHCSSVYQEGDARSALIV 835


>03_05_0456 - 24498212-24499581,24502660-24503071
          Length = 593

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -1

Query: 733 GVGGPXXGIVSFRSSTAIVTFTINILVVFXNDSVSTLYIMRPVALLVI 590
           G G P    V+   +TA++ F  ++ V+    S+STL+I   VA+ ++
Sbjct: 395 GTGTPVNATVAMLLATAVIAFFTDLNVLSNLLSISTLFIFMLVAVALL 442


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,111,608
Number of Sequences: 37544
Number of extensions: 312852
Number of successful extensions: 730
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)